Files in zgyaru/testSctpa
A portable toolkit for pathway activity score calculation
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/PAS.R
R/RcppExports.R
R/aucells.R
R/examples.R
R/gsva.R
R/plage.R
R/readPathwayToSignature.R
R/ssgsea.R
R/test.R
R/tools.R
R/utils.R
R/vision.R
R/zscore.R
README.md
data/test.rds
inst/gmtFiles/human/ASCN2.gmt
inst/gmtFiles/human/CGN.gmt
inst/gmtFiles/human/CGP.gmt
inst/gmtFiles/human/CM.gmt
inst/gmtFiles/human/GO.bp.gmt
inst/gmtFiles/human/GO.cc.gmt
inst/gmtFiles/human/GO.mf.gmt
inst/gmtFiles/human/Immu.gmt
inst/gmtFiles/human/OncoG.gmt
inst/gmtFiles/human/PID.gmt
inst/gmtFiles/human/TFT.gmt
inst/gmtFiles/human/biocarta.gmt
inst/gmtFiles/human/c2.kegg.gmt
inst/gmtFiles/human/hallmarker.gmt
inst/gmtFiles/human/humancyc.gmt
inst/gmtFiles/human/kegg.gmt
inst/gmtFiles/human/nci.gmt
inst/gmtFiles/human/panther.gmt
inst/gmtFiles/human/pharmgkb.gmt
inst/gmtFiles/human/reactome.gmt
inst/gmtFiles/human/scSignature.gmt
inst/gmtFiles/human/smpdb.gmt
inst/gmtFiles/mouse/GO.bp.gmt
inst/gmtFiles/mouse/GO.cc.gmt
inst/gmtFiles/mouse/GO.mf.gmt
inst/gmtFiles/mouse/TFT.gmt
inst/gmtFiles/mouse/biocarta.gmt
inst/gmtFiles/mouse/drug.gmt
inst/gmtFiles/mouse/kegg.gmt
inst/gmtFiles/mouse/mousecyc.gmt
inst/gmtFiles/mouse/panther.gmt
inst/gmtFiles/mouse/reactome.gmt
man/calAUC.Rd
man/calGsva.Rd
man/calPlage.Rd
man/calSSgsea.Rd
man/calVision.Rd
man/calZscore.Rd
man/cal_PAS.Rd
man/cal_all_tools.Rd
man/cal_fscLVM.Rd
man/colVarsSp.Rd
man/getGMT.Rd
man/getPathways.Rd
man/innerEvalSignatureBatchNorm.Rd
man/load_counts.Rd
man/matLog2.Rd
man/readSignaturesInput.Rd
man/sigsToSparseMatrix.Rd
pic/Rplot.png
pic/clustering.png
src/RcppExports.cpp
src/ker.cpp
src/ks_test.cpp
testSctpa.Rproj
tests/testthat.R
