Man pages for zgyaru/testSctpa
A portable toolkit for pathway activity score calculation
| cal_all_tools | calculation seven tools |
| calAUC | AUCell functions |
| cal_fscLVM | calculate PAS by nine tools |
| calGsva | GSVA functions |
| cal_PAS | calculation Pathway Activity Score |
| calPlage | plage functions |
| calSSgsea | ssGSEA functions |
| calVision | VISION functions |
| calZscore | zscore functions |
| colVarsSp | Compute col-wise variance on matrix without densifying |
| getGMT | functions to convert data types |
| getPathways | loading pathways or gene sets |
| innerEvalSignatureBatchNorm | Used in inner loop of batchSigEvalNorm |
| load_counts | examples for test |
| matLog2 | log2-scale transform a dense OR sparse matrix |
| readSignaturesInput | Reads in a list of signature input files. |
| sigsToSparseMatrix | Utility method to load signatures into a sparse matrix |
