exclude.snps: Excluding SNPs from specified regions
In zhangh12/ARTP2: Pathway and Gene-Level Association Test
Description
Usage
Arguments
Value
Description
exclude.snps is used to exclude SNPs from specified regions, for example, the GWAS hits and their neighbors.
Usage
1
exclude.snps(stat, excluded.regions)
Arguments
stat
a data frame containing at least two columns Chr and Pos, i.e., the chromosome numbers and base-pair position (bp units) of SNPs.
excluded.regions
a data frame specifying the regions to be excluded. It must contains columns Chr, Start, and End. The unit is base-pair (bp). SNPs within [Start, End] will be excluded.
Value
A data frame containing a subset of stat after excluding SNPs in specified regions.
zhangh12/ARTP2 documentation built on Aug. 16, 2019, 7:27 p.m.
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Description Usage Arguments Value
Description
exclude.snps is used to exclude SNPs from specified regions, for example, the GWAS hits and their neighbors.
Usage
1 | exclude.snps(stat, excluded.regions)
|
Arguments
stat |
a data frame containing at least two columns |
excluded.regions |
a data frame specifying the regions to be excluded. It must contains columns |
Value
A data frame containing a subset of stat after excluding SNPs in specified regions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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