integrateMethod | R Documentation |
Integrate method for identifying miRNA sponge interactions by integrating different methods.
integrateMethod(Interlist, Intersect_num)
Interlist |
List object, a list of miRNA sponge interactions from different methods. |
Intersect_num |
The least number of different methods intersected for integration. The value of 1 means the union of miRNA sponge interactions from different methods. |
A list of integrated miRNA sponge interactions.
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
# Obtain expression data file "ExpData.csv" in csv format ExpDatacsv <- system.file("extdata","ExpData.csv",package="miRspongeR") ExpData <- read.csv(ExpDatacsv, header=TRUE, sep=",") # Obtain miRNA-target interaction data file "miR2Target.csv" in csv format miR2Target <- system.file("extdata", "miR2Target.csv", package="miRspongeR") miRTarget <- read.csv(miR2Target, header=TRUE, sep=",") miRHomologyceRInt <- spongeMethod(miRTarget, method = "miRHomology") pcceRInt <- spongeMethod(miRTarget, ExpData, method = "pc") sppcceRInt <- spongeMethod(miRTarget, ExpData, method = "sppc") Interlist <- list(miRHomologyceRInt[, 1:2], pcceRInt[, 1:2], sppcceRInt[, 1:2]) IntegrateceRInt <- integrateMethod(Interlist, 2)
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