SciBet_R: Classify cells of a given query dataset using a reference...

In zhangwenjie-tina/scibetR:

Classify cells of a given query dataset using a reference dataset.

Description

SciBet main function. Train SciBet with the reference dataset to assign cell types for the query dataset.

Usage

SciBet_R(train, test, k=1000,result="list")

Arguments

train	The reference dataset, with rows being cells, and columns being genes. The last column should be "label".
test	The query dataset. Rows should be cells and columns should be genes.
k	Number of genes to select according to the total entropy differneces among cell types.
result	Return "table" or "list".

Value

return the predicted cell types.

zhangwenjie-tina/scibetR documentation built on July 6, 2023, 2:14 p.m.