README.md

In zhengxwen/SCArray: Large-scale single-cell RNA-seq data manipulation with GDS files

Large-scale single-cell RNA-seq data manipulation using GDS files

GNU General Public License, GPLv3

Features

Large-scale single-cell RNA-seq data manipulation and statistical analysis with scalable implementation of generalized mixed models and principal component analysis. The package integrates the sparse matrix in Genomic Data Structure (GDS) files and the Bioconductor infrastructure framework to provide out-of-memory data storage and manipulation using the R programming language.

Bioconductor:

Development Version: v0.99.0 (http://bioconductor.org/packages/devel/bioc/html/SCArray.html)

Package Maintainer

Xiuwen Zheng

Installation

• Requires R (≥ v3.5.0), gdsfmt (≥ v1.24.0)

• Bioconductor repository

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("SCArray")

zhengxwen/SCArray documentation built on Jan. 1, 2021, 1:54 p.m.