README.md

In zhezhangsh/Agri:

Agri

Analysis of the genomic regions of interest

Install and load the package:

library(devtools);
install_github("zhezhangsh/Agri");
library(Agri);

Genomic regions of interest

These regions could be any type of annotated genomic regions with or without quantitative features, such as:

• Gene body
  • Exons/introns
  • Coding regions/UTRs
  • Splicing sites
  • TSS/TTS
  • miRNA binding sites
• Regulatory regions
  • Promoters
  • Enhancers
  • Insulators
  • DHS sites
  • CpG islands
• Protein binding sites
  • TF binding sites
  • Polymerase sites
  • Nuclease binding sites
• Epigenomic sites
  • histone marks
  • DNA methylation sites
• Structural variations
  • CNV
  • Chromosome interaction

zhezhangsh/Agri documentation built on May 4, 2019, 11:20 p.m.