Files in zhezhangsh/CHOPseq
CHOPseq.Rproj
DESCRIPTION
NAMESPACE
R/Convert2bedGraph.R
R/RetrieveSegment.R
R/SplitCigar.R
README.md
example/filter_reads/filter_reads.yml
export_functions.r
function/CHOPbic.Colors.R
function/CHOPbic.DAVID.Query.R
function/CHOPbic.Excel.R
function/CHOPbic.FancyHist.R
function/CHOPbic.GSEA.R
function/CHOPbic.PCA.R
function/CHOPbic.SAM.2Groups.R
function/CHOPbic.Volcano.R
function/CHOPseq.BamScanner.R
function/CHOPseq.BamScannerChr.R
function/CHOPseq.BamScannerLoc.R
function/CHOPseq.CovCorr.R
function/CHOPseq.EffectiveSize.R
function/CHOPseq.FilterByChr.R
function/CHOPseq.FilterByMapq.R
function/CHOPseq.GetSegments.R
function/CHOPseq.MapqCorr.R
function/CHOPseq.MatchPWM.R
function/CHOPseq.NearestPeak.R
function/CHOPseq.NearestPeak2.R
function/CHOPseq.NoRedundant.R
function/CHOPseq.PairPeaks.R
function/CHOPseq.PairedPeakDist.R
function/CHOPseq.ParseRefGene.R
function/CHOPseq.PeakCaller.2.R
function/CHOPseq.PeakCaller.R
function/CHOPseq.PeakDensity.R
function/CHOPseq.PeakFDR.R
function/CHOPseq.PeakStats.R
function/CHOPseq.PeaksInRegions.R
function/CHOPseq.ProcessTag.R
function/CHOPseq.Reads2UCSC.R
function/CHOPseq.RelocateSummit.R
function/CHOPseq.RemoveDup.R
function/CHOPseq.RetrieveGadem.R
function/CHOPseq.RetrieveSeq.R
function/CHOPseq.ReversePWM.R
function/CHOPseq.StrandCorr.R
function/SC.Aligner.R
function/SC.AlignmentRepetitive.r
function/SC.Bam2R.R
function/SC.BamScanner.R
function/SC.BamScannerChr.R
function/SC.BamScannerSlim.R
function/SC.ClusterAlignCount.R
function/SC.Colors.R
function/SC.Compare.2Groups.R
function/SC.ComparePairOfCounts.R
function/SC.CovAtPeaksOnly.R
function/SC.CreateRefGene.R
function/SC.DAVID.R
function/SC.Dist2Gap.r
function/SC.Dist2Nearest.R
function/SC.Excel.R
function/SC.FastT.R
function/SC.Fisher.R
function/SC.GetSegments.R
function/SC.GetTrack.R
function/SC.Gzip.R
function/SC.LoadGenome.r
function/SC.LoadReference.r
function/SC.MetaCorr.R
function/SC.PCA.R
function/SC.PlotExons.R
function/SC.PlotLandscape.R
function/SC.ReadCount.R
function/SC.Reads2UCSC.R
function/SC.RemoveN.R
function/SC.Retrieve.Annotation.R
function/SC.RetrieveSeq.R
function/SC.RleRemoveBG.R
function/SC.SamBasicFields.R
function/SC.StrandCorr.R
function/SC.Sweatex.R
function/SC.UpdateMeta.R
function/SC.Venn.R
