segment_arbor: Find a neuron's anatomic segments delimited by border_tag
In zhihaozheng/rmushroom: Analysis of Mushroom Body neurons using the R NeuroAnatomy Toolbox
Description
Usage
Arguments
Value
Description
Anatomic segments could be boutons ('bouton border' tag)
or claws ('claw border' tag).
The tags label border nodes that define the anatomic segments in
alternate fashion.
Take boutons for example in dfs order,
Root -> 1st tagged node: non-bouton,
1st tagged node -> 2nd tagged node: bouton,
2nd tagged node -> 3rd tagged node: non-bouton
...
Usage
1
segment_arbor(n, border_tag, skid = NULL)
Arguments
n
A neuron
border_tag
name of the tag labeling the nodes that define the border
skid
optional, but I always like to include skid as part of the unique
id for each anatomic segment.
Value
neuron with 2 new fields: AnaSeg, a list with each element containing
node indices in a single anatmic segment (a bouton or a claw); BoutonEnds, indices of end nodes of
each terminal bouton
zhihaozheng/rmushroom documentation built on May 4, 2019, 11:21 p.m.
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Description Usage Arguments Value
Description
Anatomic segments could be boutons ('bouton border' tag) or claws ('claw border' tag). The tags label border nodes that define the anatomic segments in alternate fashion. Take boutons for example in dfs order, Root -> 1st tagged node: non-bouton, 1st tagged node -> 2nd tagged node: bouton, 2nd tagged node -> 3rd tagged node: non-bouton ...
Usage
1 | segment_arbor(n, border_tag, skid = NULL)
|
Arguments
n |
A neuron |
border_tag |
name of the tag labeling the nodes that define the border |
skid |
optional, but I always like to include skid as part of the unique id for each anatomic segment. |
Value
neuron with 2 new fields: AnaSeg, a list with each element containing node indices in a single anatmic segment (a bouton or a claw); BoutonEnds, indices of end nodes of each terminal bouton
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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