get_tx_seq: Get coding sequence of a transcript
In zhiyhu/masonmd: Make Sense of Nonsense-Mediated Decay
Description
Usage
Arguments
Details
Value
Description
Get positions and junction for the coding sequence of a transcript
Usage
1
get_tx_seq(tx_pos, ncbi_build)
Arguments
tx_pos
The positional information of transcipt from TxDB
ncbi_build
NCBI_build
Details
Get the absolute positions on chromosomes for each nucleotide on the coding sequence for
a given transcript; and indicate the exon-exon junctions in the coding sequence
Value
A list containing two entries:
wt_pos numeric string; the absolute positions on chromosomes for each nucleotide on the coding sequence
exonJunction numeric string with 0 and 1; 1 represents the position of junctions
zhiyhu/masonmd documentation built on May 20, 2019, 12:37 p.m.
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Description Usage Arguments Details Value
Description
Get positions and junction for the coding sequence of a transcript
Usage
1 | get_tx_seq(tx_pos, ncbi_build)
|
Arguments
tx_pos |
The positional information of transcipt from TxDB |
ncbi_build |
NCBI_build |
Details
Get the absolute positions on chromosomes for each nucleotide on the coding sequence for a given transcript; and indicate the exon-exon junctions in the coding sequence
Value
A list containing two entries:
wt_posnumeric string; the absolute positions on chromosomes for each nucleotide on the coding sequenceexonJunctionnumeric string with 0 and 1; 1 represents the position of junctions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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