plot.jip: plot jip test data measured by LI-6800

In zhujiedong/jiptest: Jip Test For LI-6800

plot jip test data measured by LI-6800

Description

a quick way to preview the quality of measured data.graphical preview of all the data curves in log axis (BLUE > 1.2.2), use normalized signal

Usage

## S3 method for class 'jip'
plot(
  df,
  alpha = 0.6,
  def_pch = 19,
  col = NULL,
  leg_bty = "n",
  leg_cex = 0.6,
  leg_point_cex = 0.9,
  legend_pos = "topleft",
  xlim = NULL,
  ylim = c(0, 1),
  log = "x",
  xlab = "Time (ms)",
  ylab = "Fluorescence signal",
  xmark = c(expression(10^{
     -3
 }, 10^{
     -2
 }, 10^{
     -1
 }, 10^{
     0
 },
    10^{
     1
 }, 10^2, 10^3)),
  xat = c(0.001, 0.01, 0.1, 1, 10, 100, 1000),
  use_PAM = FALSE,
  add_leg = TRUE,
  add_grid = TRUE,
  ...
)

Arguments

df	files read by read_induction or read_all_induction
alpha	the transparent degree of colors in the plot
def_pch	the pch of default plot method
col	inherited from plot.default
leg_bty	bty in legend
leg_cex	text size of legend
leg_point_cex	point size of legend
legend_pos	inherited from legend position
xlim	Limits for the Y axis, the default should be enough for most cases
ylim	Limits for the Y axis, if left blank estimated from data
log	inherited from plot.default
xlab	inherited from plot.default
ylab	inherited from plot.default
xmark	x tick marks values
xat	at which the x axis tick marks are ploted
use_PAM	whether to use pam signal, default FALSE
add_leg	defaut is true, add lengend directly
add_grid	add grid lines in the plot if TRUE(default)
...	other parameters in plot

zhujiedong/jiptest documentation built on April 23, 2024, 12:12 p.m.