FilterMetaphlan2Profile: Filter metaphlan2 profile

In zhunshi/metastat: What the Package Does (One Line, Title Case)

Filter metaphlan2 profile

Description

Filter metaphlan2 profile

Usage

FilterMetaphlan2Profile(
  pro,
  include = c("k__Bacteria", "k__Archaea"),
  remove_unclassified = TRUE,
  remove_noname = TRUE,
  normalize = TRUE
)

Arguments

pro	input splited metaphlan2 profile in a rank, e.g. genus
include	any kingdom included, default k__Bacteria and K__Archaea. The prefix "K__" is needed.
remove_unclassified	if remove unclasssified features in profiles.
remove_noname	if remove features with noname.
normalize	if normalization after above process.

Value

dataframe

zhunshi/metastat documentation built on Feb. 25, 2023, 10:07 p.m.