API for zijianni/SpotClean
SpotClean adjusts for spot swapping in spatial transcriptomics data
| Global functions | |
|---|---|
| .AtA | Source code |
| .AtZ | Source code |
| .SpotClean | Source code |
| .calculate_cont_rate | Source code |
| .calculate_euclidean_weight | Source code |
| .cauchy_kernel | Source code |
| .check_arguments | Source code |
| .dAtA_dc | Source code |
| .dAtA_dr | Source code |
| .dAtZ_dc | Source code |
| .dAtZ_dr | Source code |
| .decont_EM | Source code |
| .estimate_cont | Source code |
| .fn_optim | Source code |
| .gaussian_kernel | Source code |
| .geom_spatial | Source code |
| .ggname | Source code |
| .gr_optim | Source code |
| .laplace_kernel | Source code |
| .linear_kernel | Source code |
| .local_kernel | Source code |
| .points_to_sdv | Source code |
| .scale_fill_fun | Source code |
| .visualize_heatmap | Source code |
| .visualize_label | Source code |
| SpotClean | Man page |
| SpotClean-package | Man page |
| arcScore | Man page Source code |
| arcScore.SummarizedExperiment | Man page Source code |
| arcScore.default | Man page Source code |
| convertToSeurat | Man page Source code |
| createSlide | Man page Source code |
| keepHighGene | Man page Source code |
| mbrain_raw | Man page |
| read10xRaw | Man page Source code |
| read10xRawH5 | Man page Source code |
| read10xSlide | Man page Source code |
| spotclean | Man page Source code |
| spotclean.SpatialExperiment | Man page Source code |
| spotclean.SummarizedExperiment | Man page Source code |
| visualizeHeatmap | Man page Source code |
| visualizeHeatmap.SummarizedExperiment | Man page Source code |
| visualizeHeatmap.default | Man page Source code |
| visualizeLabel | Man page Source code |
| visualizeLabel.SummarizedExperiment | Man page Source code |
| visualizeLabel.default | Man page Source code |
| visualizeSlide | Man page Source code |
