mbrain_raw: Example 10x Visium spatial data: raw count matrix
In zijianni/SpotClean: SpotClean adjusts for spot swapping in spatial transcriptomics data
mbrain_raw R Documentation
Example 10x Visium spatial data: raw count matrix
Description
This dataset contains one sparse count matrix
mbrain_raw of gene expressions. The original dataset can be found at
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.0.0/V1_Adult_Mouse_Brain.
For simplicity, we only keep the top 100 highest expressed genes in this
example data.
If users read raw data using read10xRaw (or read10xRawH5),
they should get exactly the same format as the object in this dataset.
Usage
data(mbrain_raw)
Format
An object of class "dgCMatrix".
Source
Examples
data(mbrain_raw)
str(mbrain_raw)
zijianni/SpotClean documentation built on Nov. 15, 2023, 12:53 a.m.
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| mbrain_raw | R Documentation |
Example 10x Visium spatial data: raw count matrix
Description
This dataset contains one sparse count matrix
mbrain_raw of gene expressions. The original dataset can be found at
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.0.0/V1_Adult_Mouse_Brain.
For simplicity, we only keep the top 100 highest expressed genes in this
example data.
If users read raw data using read10xRaw (or read10xRawH5),
they should get exactly the same format as the object in this dataset.
Usage
data(mbrain_raw)
Format
An object of class "dgCMatrix".
Source
Examples
data(mbrain_raw)
str(mbrain_raw)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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