Man pages for zijianni/SpotClean
SpotClean adjusts for spot swapping in spatial transcriptomics data
| ARCScore | Calculate the ambient RNA contamination (ARC) score |
| ConvertToSeurat | Convert slide object to Seurat object |
| CreateSlide | Create a new slide object |
| KeepHighGene | Filter and return highly expressed or highly variable genes |
| mbrain_raw | Example 10x Visium spatial data: raw count matrix |
| Read10x | Read 10x Space Ranger output data |
| SpotClean | Decontaminate spot swapping effect in spatial transcriptomics... |
| SpotClean-package | SpotClean: a computational method to adjust for spot swapping... |
| VisualizeHeatmap | Visualize spot values on the 2D slide |
| VisualizeLabel | Visualize spot labels on the 2D slide |
| VisualizeSlide | Visualize the Visium slide image |
