DESeq2_FisherPvalue_Onepair_Padj: Combine Adjusted P values for one pair of input and output

In zijinw/mmcc: R Functions used in McClelland Lab, University of California, Irvine

Description

This function is a variation of function DESeq2_FisherPvalue_Onepair

Usage

DESeq2_FisherPvalue_Onepair_Padj(filepath, rawdatafile, num.in, num.out,
  name.out = "Input vs Output")

Arguments

filepath	The path of the raw data (excluding the data file itself). Remember to double quote the filepath.
rawdatafile	The name of the raw data file. Remember to double quote the rawdatafile, and add the ".xlsx" after the name of rawdatafile (It must be excel file)!
num.in	The number of input columns in the raw data file.
num.out	The number of output columns in the raw data file.
name.out	The prefix of columns in the output. For example, "A vs B" or "B vs C", in which "A". "B" and "C" represent the names of input and output in the raw data file. The default is "Input vs Output".

Details

This function should be used on a raw data with the following layout: 1. The first three columns must be "Feature", "Locus_Tag", "Strand" Here "Feture" can be barcode (preferred) or anything that unique. Be sure that the colnames are right! 2. The next columns are for input and output successively. Note that there is no constraint for the names of these input and output columns, but there can only be 1 kind of output. The number of columns in each output can be any number.

Examples

DESeq2_FisherPvalue_Onepair_Padj(filepath = "C:/Users/", rawdatafile = "rawdata.xlsx", num.in = 3, num.out = 3, name.out = "Input vs Output")

zijinw/mmcc documentation built on May 4, 2019, 11:23 p.m.