GEOsearchterm: GEOSearchTerm
In zji90/GEOsearch: GEOsearch
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Perform searching in NCBI GEO database.
Usage
1
GEOSearchTerm(termlist, type = "GSE")
Arguments
termlist
A character vector of terms to be searched in NCBI GEO. Typically the direct output of function "termalias"
type
Either "GSE" or "GSM". The function will search either GSE and GSM on GEO.
Details
Search the terms one by one in NCBI GEO database and return an integrated table of search results. The returned results should contain exactly the same information as the results returned by directly searching in http://www.ncbi.nlm.nih.gov/geo/.
Value
A data frame containing the search results returned from NCBI GEO.
Author(s)
Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>
Examples
1
GEOSearchTerm("Oct4 RNA-seq")
zji90/GEOsearch documentation built on May 4, 2019, 11:23 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Perform searching in NCBI GEO database.
Usage
1 | GEOSearchTerm(termlist, type = "GSE")
|
Arguments
termlist |
A character vector of terms to be searched in NCBI GEO. Typically the direct output of function "termalias" |
type |
Either "GSE" or "GSM". The function will search either GSE and GSM on GEO. |
Details
Search the terms one by one in NCBI GEO database and return an integrated table of search results. The returned results should contain exactly the same information as the results returned by directly searching in http://www.ncbi.nlm.nih.gov/geo/.
Value
A data frame containing the search results returned from NCBI GEO.
Author(s)
Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>
Examples
1 | GEOSearchTerm("Oct4 RNA-seq")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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