singlegeneplot: singlegeneplot

In zji90/TSCAN: TSCAN: Tools for Single-Cell ANalysis

singlegeneplot

Description

plot expression values of individual genes against pseudotime axis

Usage

singlegeneplot(geneexpr, order, cell_size = 2)

Arguments

geneexpr	The gene expression values. Names should agree with the pseudotime information.
order	A character vector of pseudotime cell ordering. Must be within the column names of data.
cell_size	Size of cells in the plot.

Details

This function plots the expression values of individual genes against given pseudotime

Value

ggplot2 object.

Author(s)

Zhicheng Ji, Hongkai Ji <[e-mail]>

Examples

data(lpsdata)
procdata <- preprocess(lpsdata)
lpsmclust <- exprmclust(procdata)
lpsorder <- TSCANorder(lpsmclust,orderonly=TRUE,flip=TRUE)
#Choose STAT1 gene expression to plot
STAT2expr <- log2(lpsdata["STAT2",]+1)
singlegeneplot(STAT2expr, lpsorder)

zji90/TSCAN documentation built on Sept. 14, 2022, 10:56 a.m.