revigo: ReviGO output

In zroger49/revigoR: Revigo API in R

ReviGO output

Description

Run the Revigo algorithm on a set of GO terms

Usage

revigo(
  data,
  namespace = "1",
  cutoff = 0.7,
  speciesTaxon = "9606",
  measure = "SIMREL"
)

Arguments

data	The GO terms summarise; Can either be a single collum table with just the GO terms or a two collum table with the GO terms and the p.value
namespace	GO terms category; 1 - BP, 2 - CC, 3 - MF
speciesTaxon	<- Species taxon n (9606 is human)
measure	<- Similarity Measure
Cutoff	<- propotion of terms to keep

Value

List of GO terms after Revigo

zroger49/revigoR documentation built on May 23, 2022, 12:49 a.m.