Man pages for zsmith27/BAP
NYSDEC Benthic Macroinvertebrate IBI
| all_metrics | Calculate All Metrics |
| bap_jab | BAP Jab |
| bap_mp_nav_waters | BAP Multiple-Plate Samples Navigable Waters |
| bap_mp_non_nav_water | BAP Multiple-Plate Samples Non-Navigable Waters |
| bap_ponar | BAP Ponar |
| bap_riffle | BAP Riffle |
| calc.isd | Calculate All of the ISD Models |
| data_prep | Prepare the Data |
| ept_rich | EPT Richness Excluding Tolerant Taxa |
| event_prep | Create an Event_ID |
| group_rich | Vector of taxa richness for a specific list of taxa |
| isd.func | ISD Base Function |
| isd.models | ISD Models |
| isd_prep | ISD Preparation |
| pct_acid_tol | Acid Tolerance Index (ATI) |
| pct_dom3 | Percentage of the 3rd Dominant Family |
| pct_rich_ephem_epeorus | Percent Ephemeroptera Richness minus Epeorus |
| pct_taxon | Percentage of a Taxon |
| pma | Percent Model Affinity (PMA) |
| pma_ponar | Ponar Percent Model Affinity (PMA) |
| prep_master_taxa | Prepare Master Taxa List |
| rich_ephemeroptera | Ephemeroptera Richness |
| rich_nco | Non-Chironomidae and Oligochaeta Taxa Richness |
| score_ept_jab | Score EPT Richness (Jab) |
| score_ept_mp_nav_water | Score EPT Richness (Multiple-Plate Navigable Waters) |
| score_ept_mp_non_nav_water | Score EPT Richness (Multiple-Plate Non-Navigable Waters) |
| score_ept_riffle | Score EPT Richness (Riffle) |
| score_hbi_jab | Score HBI (Jab) |
| score_hbi_mp_nav_water | Score HBI (Multiple-Plate Navigable Waters) |
| score_hbi_mp_non_nav_water | Score HBI (Multiple-Plate Non-Navigable Waters) |
| score_hbi_ponar | Score HBI (Ponar) |
| score_hbi_riffle | Score HBI (Riffle) |
| score_nbip_riffle | Score NBI-P (Riffle) |
| score_nco_jab | Score NCO Richness (Jab) |
| score_pct_dom3_ponar | Score Percent DOM-3 (Ponar) |
| score_pma_ponar | Score PMA (Ponar) |
| score_pma_riffle | Score PMA (Riffle) |
| score_rich_jab | Score Richness (Jab) |
| score_rich_mp_nav_water | Score Richness (Multiple-Plate Navigable Waters) |
| score_rich_mp_non_nav_water | Score Richness (Multiple-Plate Non-Navigable Waters) |
| score_rich_ponar | Score Richness (Ponar) |
| score_rich_riffle | Score Richness (Riffle) |
| score_shannon_mp_nav_water | Score Shannon-Wiener Diversity (Multiple-Plate Navigable... |
| score_shannon_mp_non_nav_water | Score Shannon-Wiener Diversity (Multiple-Plate Non-Navigable... |
| score_shannon_ponar | Score Shannon-Wiener Diversity (Ponar) |
| taxa_prep | Prepare the Taxonomic Count Data |
| taxa_prep2 | Prepare the Taxonomic Count Data |
| taxa_prep3 | Prepare the Taxonomic Count Data |
| tol_index | Tolerance Indices (Hilsenhoff, NBI_P, NBI_N) |
| wide | Wide Data Frame Transform taxa count data from long to wide... |
