Description Usage Arguments Value
View source: R/taxa_tol_index.R
Calculate the percentage of each sample represented by the specified taxon or taxa.
1 2 3 4 5 6 7 8 9 | taxa_tol_index(
.dataframe,
.key_col,
.counts_col,
.filter = NULL,
.unnest_col = NULL,
.tol_col,
na.rm = TRUE
)
|
.dataframe |
A data frame where each row should represent the number of individuals enumerated for a single taxon collected during a single sampling event. |
.key_col |
One unquoted column name that represents a key (i.e., unique ID) for a sampling event for which to group (i.e., aggregate) the data. |
.counts_col |
One unquoted column name that represents taxonomic counts. |
.filter |
A logical statement to subset the data frame prior to calculating the metric of interest. |
.unnest_col |
One unqouted column name that represents nested data. If this column is NULL (default), then the data will not be unnested. |
.tol_col |
One unqouted column name that represents numeric tolerance values. |
na.rm |
A logical value indicating if taxa with missing tolerance values (.tol_val = NA) should be removed prior to calculating the tolerance index. The default is TRUE, NA values should will be removed, becuase missing values will be effectively treated as zeros during calculations; this will incorrectly skew the final value to the lower range of the index spectrum. |
A numeric vector.
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