visualizeRegionIntensity: visualize region

In zwdzwd/wzard: R utilities

Description

visualize region

Usage

visualizeRegionIntensity(chrm, plt.beg, plt.end, data, platform = "EPIC",
  refversion = "hg19", heat.height = NULL, draw = TRUE,
  show.sampleNames = TRUE, show.samples.n = NULL, show.probeNames = TRUE,
  na.rm = FALSE, dmin = 0, dmax = 1)

Arguments

chrm	chromosome
plt.beg	begin of the region
plt.end	end of the region
data	data matrix (row: probes, column: samples)
platform	hm450 (default) or EPIC
refversion	hg19
heat.height	heatmap height (auto inferred based on rows)
draw	draw figure or return data
show.sampleNames	whether to show sample names
show.samples.n	number of samples to show (default: all)
show.probeNames	whether to show probe names
na.rm	remove probes with all NA.
dmin	data minimum on color scale
dmax	data maximum on color scale

zwdzwd/wzard documentation built on May 5, 2019, 2:39 a.m.