ipm_analyse: Analyse data for a simulation study

In zywhy9/IPM: Integrated Population Model

Description

Using the model of interest to analyse the simulation by the model of interest.

Usage

ipm_analyse(
  data,
  Plot = FALSE,
  model = "lcl",
  priors = NULL,
  maxtime = 5,
  unit = "mins",
  save = 20000L,
  chain = 3,
  moni,
  inits = NULL
)

Arguments

data	an nlists object, simulation dataset returned by ipm_sim.
Plot	a flag, indicates whether to save the traceplot and the density plot for MCMC outputs.
model	a string, specifying the model of interest. Default is "lcl", which means using composite likelihood to analyse the simulation from true joint likelihood. Similarly, you can use "ll" or "clcl".
priors	a string of code to set the prior.
maxtime	a scalar, specifying the maximum time to spend on analysis.
unit	a character string specifying the units of time for max.time. See difftime.
save	a scalar, the number of (potentially thinned) samples to save.
chain	a scalar, the number of MCMC chains.
moni	a vector of string or a string, specifying the parameters want to monitor.
inits	a list, specifying the initial values of parameters.

Value

a mcmcrs object, the MCMC outputs, and plots (If plot=TRUE).

zywhy9/IPM documentation built on April 19, 2020, 10:24 p.m.