PlotStatis: Plot ordination results with credible regions based on...

In boyuren158/DirFactor: Dependent Dirichlet processes factor model for nonparametric ordination fo microbiome data

Description

Plot ordination results with credible regions based on posterior simulations from DirFactor.

Usage

PlotStatis(all.cov, n.dim = 2, labels = NA, types = NA, dist = F)

Arguments

all.cov	Posterior samples of normalized Gram matrix/distance matrix between biological samples.
n.dim	Total number of axes visualized. Default is 2.
labels	Labels associated with each biological samples. Default is NA. If not NA, labels will be annote onto the figure.
types	Types of each biological samples. Default is NA. If not NA, the contour corresponds to each biological samples will be colored based on the type of this sample.
dist	A logical flag indicates the types of input. Default is FALSE, meaning each element in all.cov is a normalized Gram matrix. If set to TRUE, each element in all.cov is a distance matrix.

Value

A list contains all pairwise ordination plots between the first n.dim axes.

Note

The STATIS method is implemented by DistatisR (Abdi et. al. (2005)).

boyuren158/DirFactor documentation built on May 13, 2019, 1:38 a.m.