Description Usage Arguments Value Author(s)
Gene Set Enrichment Analysis of Reactome Pathway
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | gsePathway(
geneList,
organism = "human",
exponent = 1,
minGSSize = 10,
maxGSSize = 500,
eps = 1e-10,
pvalueCutoff = 0.05,
pAdjustMethod = "BH",
verbose = TRUE,
seed = FALSE,
by = "fgsea",
...
)
|
geneList |
order ranked geneList |
organism |
organism |
exponent |
weight of each step |
minGSSize |
minimal size of each geneSet for analyzing |
maxGSSize |
maximal size of each geneSet for analyzing |
eps |
This parameter sets the boundary for calculating the p value. |
pvalueCutoff |
pvalue Cutoff |
pAdjustMethod |
pvalue adjustment method |
verbose |
print message or not |
seed |
logical |
by |
one of 'fgsea' or 'DOSE' |
... |
other parameter |
gseaResult object
Yu Guangchuang
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