BasiliskEnvironment-class: The BasiliskEnvironment class

In basilisk: Freezing Python Dependencies Inside Bioconductor Packages

Description

The BasiliskEnvironment class provides a simple structure containing all of the information to construct a basilisk environment. It is used by basiliskStart to perform lazy installation.

Constructor

BasiliskEnvironment(envname, pkgname, packages) will return a BasiliskEnvironment object, given:

• envname, string containing the name of the environment. Environment names starting with an underscore are reserved for internal use.

• pkgname, string containing the name of the package that owns the environment.

• packages, character vector containing the names of the required Python packages from conda, see setupBasiliskEnv for requirements.

• channels, character vector specifying the Conda channels to search.

• pip, character vector containing names of additional Python packages from PyPi, see setupBasiliskEnv for requirements.

Author(s)

Aaron lun

Examples

BasiliskEnvironment("my_env1", "AaronPackage", 
    packages=c("scikit-learn=0.22.0", "pandas=0.24.1"))

basilisk documentation built on Dec. 18, 2020, 2 a.m.