geom_strip: geom_strip

In ggtree: an R package for visualization of tree and annotation data

Description

annotate associated taxa (from taxa1 to taxa2, can be Monophyletic, Polyphyletic or Paraphyletc Taxa) with bar and (optional) text label

Usage

geom_strip(
  taxa1,
  taxa2,
  label,
  offset = 0,
  offset.text = 0,
  align = TRUE,
  barsize = 0.5,
  extend = 0,
  fontsize = 3.88,
  angle = 0,
  geom = "text",
  hjust = 0,
  color = "black",
  fill = NA,
  family = "sans",
  parse = FALSE,
  ...
)

Arguments

taxa1	taxa1
taxa2	taxa2
label	optional label
offset	offset of bar and text from the clade
offset.text	offset of text from bar
align	logical
barsize	size of bar
extend	extend bar vertically
fontsize	size of text
angle	angle of text
geom	one of 'text' or 'label'
hjust	hjust
color	color for bar and label
fill	fill label background, only work with geom='label'
family	sans by default, can be any supported font
parse	logical, whether parse label
...	additional parameter

Value

ggplot layers

Author(s)

Guangchuang Yu

ggtree documentation built on Nov. 15, 2020, 2:09 a.m.