Man pages for ggtree
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

add_colorbaradd_colorbar
add-TREEDATA%<+%
add_TREEINFO%+>%
annotation_imageannotation_image
applyLayoutDaylightapplyLayoutDaylight
as.polytomyas.polytomy
collapsecollapse-ggtree
Date2decimalDate2decimal
decimal2Datedecimal2Date
dotFun.
expandexpand
facet_plotfacet_plot
flipflip
geom_alinegeom_aline
geom_balancegeom_balance
geom_cladelabelgeom_cladelabel
geom_cladelabel2geom_cladelabel2
geom_hilightgeom_hilight
geom_hilight_encirclegeom_hilight_encircle
geom_label2geom_label2
geom_motifgeom_motif
geom_nodelabgeom_nodelab
geom_nodepointgeom_nodepoint
geom_point2geom_point2
geom_rangegeom_range
geom_rootpointgeom_rootpoint
geom_segment2geom_segment2
geom_stripgeom_strip
geom_taxalinkgeom_taxalink
geom_text2geom_text2
geom_tiplabgeom_tiplab
geom_tiplab2geom_tiplab2
geom_tippointgeom_tippoint
geom_treegeom_tree
geom_tree2geom_tree2
geom_treescalegeom_treescale
get_balance_positionget_balance_position
getChild.dfgetChild.df
get_clade_positionget_clade_position
get_heatmap_column_positionget_heatmap_column_position
getNodeAngle.dfgetNodeAngle.df
getNodesBreadthFirst.dfgetNodesBreadthFirst.df
get.offspring.tipget.offspring.tip
getParent.dfgetParent.df
get.pathget.path
getSubtreegetSubtree
getSubtree.dfgetSubtree.df
getSubtreeUnrootedgetSubtreeUnrooted
getSubtreeUnrooted.dfgetSubtreeUnrooted
get_taxa_nameget_taxa_name
getTreeArcAnglesgetTreeArcAngles
ggtreevisualizing phylogenetic tree and heterogenous associated...
ggtree-ggprotoStatBalance
gheatmapgheatmap
gzoom-methodsgzoom method
gzoom.phylogzoom
identifyidentify
insetinset
layoutDaylightEqual daylight layout method for unrooted trees.
layoutEqualAnglelayoutEqualAngle
MRCAMRCA
msaplotmsaplot
multiplotmultiplot
nodebarnodebar
nodeidnodeid
nodepienodepie
open_treeopen_tree
phylopicphylopic
pipepipe
range_formatrange_format
reexportsObjects exported from other packages
reroot-methodsreroot method
rescale_treerescale_tree
revtsrevts
rotaterotate
rotate_treerotate_tree
rotateTreePoints.dfrotateTreePoints.data.fram
scaleCladescaleClade
scale_color-methodsscale_color method
scale_x_ggtreescale_x_ggtree
set_hilight_legendset_hilight_legend
stat_balancestat_balance
stat_hilightstat_hilight
subviewsubview
theme_insettheme_inset
theme_treetheme_tree
theme_tree2theme_tree2
update-TREE%<%
viewCladeviewClade
xlim_expandxlim_expand
xlim_treexlim_tree
ggtree documentation built on Aug. 9, 2018, 10 a.m.