msaplot: msaplot

In ggtree: an R package for visualization of tree and annotation data

Description

multiple sequence alignment with phylogenetic tree

Usage

msaplot(
  p,
  fasta,
  offset = 0,
  width = 1,
  color = NULL,
  window = NULL,
  bg_line = TRUE,
  height = 0.8
)

Arguments

p	tree view
fasta	fasta file, multiple sequence alignment
offset	offset of MSA to tree
width	total width of alignment, compare to width of tree
color	color
window	specific a slice to display
bg_line	whether add background line in alignment
height	height ratio of sequence

Value

tree view

Author(s)

Guangchuang Yu

ggtree documentation built on Nov. 15, 2020, 2:09 a.m.