msaplot

Description

multiple sequence alignment with phylogenetic tree

Usage

1
msaplot(p, fasta, offset = 0, width = 1, color = NULL, window = NULL)

Arguments

p

tree view

fasta

fasta file, multiple sequence alignment

offset

offset of MSA to tree

width

total width of alignment, compare to width of tree

color

color

window

specific a slice to display

Value

tree view

Author(s)

Guangchuang Yu

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