msaplot: msaplot

Description Usage Arguments Value Author(s)

View source: R/msaplot.R

Description

multiple sequence alignment with phylogenetic tree

Usage

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msaplot(p, fasta, offset = 0, width = 1, color = NULL, window = NULL,
  bg_line = TRUE, height = 0.8)

Arguments

p

tree view

fasta

fasta file, multiple sequence alignment

offset

offset of MSA to tree

width

total width of alignment, compare to width of tree

color

color

window

specific a slice to display

bg_line

whether add background line in alignment

height

height ratio of sequence

Value

tree view

Author(s)

Guangchuang Yu


ggtree documentation built on Nov. 17, 2017, 1:06 p.m.