gheatmap: gheatmap

In ggtree: an R package for visualization of tree and annotation data

Description

append a heatmap of a matrix to right side of phylogenetic tree

Usage

gheatmap(
  p,
  data,
  offset = 0,
  width = 1,
  low = "green",
  high = "red",
  color = "white",
  colnames = TRUE,
  colnames_position = "bottom",
  colnames_angle = 0,
  colnames_level = NULL,
  colnames_offset_x = 0,
  colnames_offset_y = 0,
  font.size = 4,
  family = "",
  hjust = 0.5,
  legend_title = "value"
)

Arguments

p	tree view
data	matrix or data.frame
offset	offset of heatmap to tree
width	total width of heatmap, compare to width of tree
low	color of lowest value
high	color of highest value
color	color of heatmap cell border
colnames	logical, add matrix colnames or not
colnames_position	one of 'bottom' or 'top'
colnames_angle	angle of column names
colnames_level	levels of colnames
colnames_offset_x	x offset for column names
colnames_offset_y	y offset for column names
font.size	font size of matrix colnames
family	font of matrix colnames
hjust	hjust for column names (0: align left, 0.5: align center, 1: align righ)
legend_title	title of fill legend

Value

tree view

Author(s)

Guangchuang Yu

ggtree documentation built on Nov. 15, 2020, 2:09 a.m.