traceplot: Traceplots of JAGS output
In jagsUI: A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses

traceplot

R Documentation

Traceplots of JAGS output

Displays a series of MCMC iteration plots for monitored parameter in a JAGS analysis, along with the calculated Rhat value.

  traceplot(x, parameters=NULL, Rhat_min=NULL, layout=NULL, ask=NULL)

`x`	A jagsUI object
`parameters`	A vector of names (as characters) of parameters to plot. Parameter names must match parameters included in the model. Calling non-scalar parameters without subsetting (e.g. `alpha`) will plot all values of `alpha`. If `parameters=NULL`, all parameters will be plotted.
`Rhat_min`	If provided, only plot parameters with Rhat values that exceed the provided value. A good min value to start with is 1.05.
`layout`	A length 2 vector with the number of rows and columns to display in the plot. The default is 3 x 3, or smaller if there are fewer parameters to plot.
`ask`	If `TRUE`, ask user for confirmation before generating each new plot; the default is to ask when output is going to the screen, not when it is going to a file.