MD_hicexp: Make MD plots for all combinations of a condition

In multiHiCcompare: Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available

Description

Make MD plots for all combinations of a condition

Usage

MD_hicexp(hicexp, prow = 3, pcol = 3, plot.chr = NA, plot.loess = FALSE)

Arguments

hicexp	A hicexp object.
prow	The number of rows to use for the grid of MD plots. Defaults to 3.
pcol	The number of columns to use for the grid of MD plots. Defaults to 3.
plot.chr	A specific chromosome or set of chromosome which you want to plot. This should be a numeric value, i.e. to plot chromosome 1 set plot.chr = 1, to plot chromosomes 1 and 5 set plot.chr = c(1, 5). Defaults to NA indicating that all chromosomes present in the hicexp will be plotted.
plot.loess	Logical, should a loess curve be plotted over the MD plots. Note setting this to TRUE will increase the computational time for plotting.

Value

A set of MD plots.

Examples

data("hicexp2")
MD_hicexp(hicexp2)

multiHiCcompare documentation built on Nov. 8, 2020, 7:04 p.m.