setup_opensource: Use the built-in open-source tof-to-mz and...

In opentimsr: An Open-Source Loader for Bruker's timsTOF Data Files

Use the built-in open-source tof-to-mz and scan-to-inv_ion_mobility converters.

Description

Activates the built-in open-source converters for tof-to-mz and scan-to-inv_ion_mobility transformations. No proprietary Bruker libraries are required.

Usage

setup_opensource()

Details

No converters are selected when the package is loaded: call either this function or setup_bruker_so before OpenTIMS. The choice is fixed when a dataset is opened. A dataset opened before either is called still returns the raw columns ('frame', 'scan', 'tof', 'intensity'), but requesting 'mz' or 'inv_ion_mobility' raises an error.

Value

No return value, called for its side effect of switching the conversion backend.

Examples

setup_opensource()

opentimsr documentation built on Nov. 5, 2026, 1:08 a.m.