getModel: Returns the Progeny Model

In progeny: Pathway RespOnsive GENes for activity inference from gene expression

Description

This function is designed for getting a model matrix with top significant genes for each pathway

Usage

getModel(organism = "Human", top = 100)

Arguments

organism	"Human" or "Mouse" taken from the main function's argument. Default to "Human"
top	Desired top number of genes for each pathway according to their significance(p.value). Default to 100

Value

This function returns model matrix according to the top n significant

Examples

#getting a model matrix according to the desired top n significant 
model <- getModel("Human", top=100)

Example output

progeny documentation built on Nov. 8, 2020, 6:51 p.m.