sits_tae | R Documentation |
Implementation of Temporal Attention Encoder (TAE) for satellite image time series classification.
TAE is a simplified version of the well-known self-attention architeture used in large language models. Its modified self-attention scheme that uses the input embeddings as values. TAE defines a single master query for each sequence, computed from the temporal average of the queries. This master query is compared to the sequence of keys to produce a single attention mask used to weight the temporal mean of values into a single feature vector.
sits_tae(
samples = NULL,
samples_validation = NULL,
epochs = 150L,
batch_size = 64L,
validation_split = 0.2,
optimizer = torch::optim_adamw,
opt_hparams = list(lr = 0.001, eps = 1e-08, weight_decay = 1e-06),
lr_decay_epochs = 1L,
lr_decay_rate = 0.95,
patience = 20L,
min_delta = 0.01,
seed = NULL,
verbose = FALSE
)
samples |
Time series with the training samples. |
samples_validation |
Time series with the validation samples. if the
|
epochs |
Number of iterations to train the model. |
batch_size |
Number of samples per gradient update. |
validation_split |
Number between 0 and 1. Fraction of training data to be used as validation data. |
optimizer |
Optimizer function to be used. |
opt_hparams |
Hyperparameters for optimizer: lr : Learning rate of the optimizer eps: Term added to the denominator to improve numerical stability. weight_decay: L2 regularization |
lr_decay_epochs |
Number of epochs to reduce learning rate. |
lr_decay_rate |
Decay factor for reducing learning rate. |
patience |
Number of epochs without improvements until training stops. |
min_delta |
Minimum improvement to reset the patience counter. |
seed |
Seed for random values. |
verbose |
Verbosity mode (TRUE/FALSE). Default is FALSE. |
A fitted model to be used for classification.
sits
provides a set of default values for all classification models.
These settings have been chosen based on testing by the authors.
Nevertheless, users can control all parameters for each model.
Novice users can rely on the default values,
while experienced ones can fine-tune deep learning models
using sits_tuning
.
This function is based on the paper by Vivien Garnot referenced below and code available on github at https://github.com/VSainteuf/pytorch-psetae.
We also used the code made available by Maja Schneider in her work with Marco Körner referenced below and available at https://github.com/maja601/RC2020-psetae.
If you use this method, please cite Garnot's and Schneider's work.
Charlotte Pelletier, charlotte.pelletier@univ-ubs.fr
Gilberto Camara, gilberto.camara@inpe.br
Rolf Simoes, rolfsimoes@gmail.com
Felipe Souza, lipecaso@gmail.com
Vivien Garnot, Loic Landrieu, Sebastien Giordano, and Nesrine Chehata, "Satellite Image Time Series Classification with Pixel-Set Encoders and Temporal Self-Attention", 2020 Conference on Computer Vision and Pattern Recognition. pages 12322-12331. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1109/CVPR42600.2020.01234")}.
Schneider, Maja; Körner, Marco, "[Re] Satellite Image Time Series Classification with Pixel-Set Encoders and Temporal Self-Attention." ReScience C 7 (2), 2021. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.5281/zenodo.4835356")}.
if (sits_run_examples()) {
# create a TAE model
torch_model <- sits_train(samples_modis_ndvi, sits_tae())
# plot the model
plot(torch_model)
# create a data cube from local files
data_dir <- system.file("extdata/raster/mod13q1", package = "sits")
cube <- sits_cube(
source = "BDC",
collection = "MOD13Q1-6.1",
data_dir = data_dir
)
# classify a data cube
probs_cube <- sits_classify(
data = cube, ml_model = torch_model, output_dir = tempdir()
)
# plot the probability cube
plot(probs_cube)
# smooth the probability cube using Bayesian statistics
bayes_cube <- sits_smooth(probs_cube, output_dir = tempdir())
# plot the smoothed cube
plot(bayes_cube)
# label the probability cube
label_cube <- sits_label_classification(
bayes_cube,
output_dir = tempdir()
)
# plot the labelled cube
plot(label_cube)
}
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