plot_gd: Plot moving window map of genetic diversity

In wingen: Continuous Mapping of Genetic Diversity

Plot moving window map of genetic diversity

Description

Plot genetic diversity layer produced by window_gd or krig_gd

Usage

plot_gd(
  x,
  bkg = NULL,
  index = NULL,
  col = viridis::magma(breaks),
  breaks = 100,
  main = NULL,
  box = FALSE,
  range = NULL,
  legend = TRUE,
  ...
)

Arguments

x	output from window_gd or krig_gd (SpatRaster where first layer is genetic diversity)
bkg	optional SpatRaster or other spatial object that will be plotted as the "background" in gray
index	if a raster stack is provided, index of the layer to plot (defaults to plotting all layers except layers named "sample_count")
col	color palette to use for plotting (defaults to magma palette)
breaks	number of breaks to use in color scale (defaults to 100)
main	character. Main plot titles (one for each layer to be plotted). You can use arguments cex.main, font.main, col.main to change the appearance; and loc.main to change the location of the main title (either two coordinates, or a character value such as "topleft")
box	whether to include a box around the Raster plot (defaults to FALSE)
range	numeric. minimum and maximum values to be used for the continuous legend
legend	whether to include legend
...	arguments passed to plot("SpatRaster", "numeric") and additional graphical arguments

Value

plot of genetic diversity

Examples

data("mini_lyr")
plot_gd(mini_lyr)

wingen documentation built on May 29, 2024, 9:59 a.m.