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A2: Atlas and Analysis of Systems-Biology-Led Pathways
Pathway-level analysis is supported using a collection of curated pathways (A2). Taking as inputs user-defined list of genes or genomic regions, it outputs pathways regulated and details gene members involved as well. Transforming genomic regions into pathways is enabled by defining modulated genes based on conformation evidence, eQTL mapping or simply genomic proximity. Together with its web-app, A2 aids in understanding molecular circuits such as resulted from differential studies at the gene and genomic region level.
Getting started
Browse package contents
Package details |
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| Author | Hai Fang, Anna Sanniti, Alicia Lledo Lara, Julian C Knight |
| Bioconductor views | Pathways Software |
| Maintainer | Hai Fang <hfang@well.ox.ac.uk> |
| License | GPL-3 |
| Version | 1.0.0 |
| URL | http://galahad.well.ox.ac.uk/A2 |
| Package repository | View on R-Forge |
| Installation |
Install the latest version of this package by entering the following in R:
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Try the A2 package in your browser
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