Animal: Analyze time-coded animal behavior data

The Animal package is a collection of functions for analyzing animal (including humans) behavior data originating from a variety of sources. The package has functions to analyze time coded behaviors from CowLog (open source software for coding behaviors from digital video) data files and observation files with similar format. Other features include hourly, daily, weekly and monthly summaries of time coded data, analysis of RIC (roughage intake system, Insentec automation) data files and labeling measurement data according to behavioral observations for e.g model building purposes.

Author
Matti Pastell <matti.pastell@helsinki.fi>
Date of publication
2012-05-09 06:41:20
Maintainer
Matti Pastell <matti.pastell@helsinki.fi>
License
GPL (>=3)
Version
1.04
URLs

View on R-Forge

Man pages

bouts.RIC
Merge bouts from RIC roughage intake files
clean.RIC
Clean RIC roughage intake log file
cowAnalyze
Analyze time coded behavior data
daily
Calculate daily values from time series
day
Convert dates to day numbers
day.string
Convert dates to string
delete.duplicates
Delete duplicated state events
freq.count
Count frequency of behaviors
hour
Convert times to hours
hourly
Calculate hourly values from time series
label.data
Label measurement data
month
Convert dates to month numbers
monthly
Calculate monthly values from time series
nunique
Count unique occurrences of variables
partOfDay
Code data into different parts of day
read.CowLog
Read CowLog datafiles
read.RIC
Read RIC feed measurement system log files
RIC
RIC roughage intake log
state.durations
Calculate state durations
week
Convert dates to week numbers
weekly
Calculate weekly values from time series

Files in this package

Animal
Animal/NAMESPACE
Animal/data
Animal/data/RIC.rda
Animal/R
Animal/R/day.string.R
Animal/R/read.CowLog.R
Animal/R/nunique.R
Animal/R/hour.R
Animal/R/weekly.R
Animal/R/state.durations.R
Animal/R/read.RIC.R
Animal/R/week.R
Animal/R/day.R
Animal/R/cowAnalyze.R
Animal/R/daily.R
Animal/R/monthly.R
Animal/R/label.data.R
Animal/R/bouts.RIC.R
Animal/R/freq.count.R
Animal/R/partOfDay.R
Animal/R/clean.RIC.R
Animal/R/delete.duplicates.R
Animal/R/month.R
Animal/R/hourly.R
Animal/inst
Animal/inst/CITATION
Animal/inst/doc
Animal/inst/doc/Animal.pdf
Animal/inst/doc/Animal.Rnw
Animal/inst/doc/calf1.bh1
Animal/DESCRIPTION
Animal/man
Animal/man/delete.duplicates.Rd
Animal/man/cowAnalyze.Rd
Animal/man/read.RIC.Rd
Animal/man/clean.RIC.Rd
Animal/man/month.Rd
Animal/man/weekly.Rd
Animal/man/label.data.Rd
Animal/man/nunique.Rd
Animal/man/day.string.Rd
Animal/man/bouts.RIC.Rd
Animal/man/daily.Rd
Animal/man/monthly.Rd
Animal/man/partOfDay.Rd
Animal/man/day.Rd
Animal/man/freq.count.Rd
Animal/man/hour.Rd
Animal/man/read.CowLog.Rd
Animal/man/state.durations.Rd
Animal/man/week.Rd
Animal/man/hourly.Rd
Animal/man/RIC.Rd