recodeGenotypes

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Description

This function recodes a binary file with allele codes to 0,1,2 and NA format.

Value Interpretation
A A
C C
G G
T T
R A o G
Y C o T
N uknown base
+ +
O - o +
- deletion
H reserved
V reserved

Usage

1
  recodeGenotypes(dataBase,naCode=9)

Arguments

dataBase

Location of the dataBase.

naCode

missing value indicator in the dataBase, the default value is 9.

Author(s)

Paulino Perez, Gustavo de los Campos, John Hickey

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