CENTIPEDE: CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
Version 1.2

Centipede fits a bayesian hierarchical mixture model to learn TF-specific distribution of experimental data on a particular cell-type for a set of candidate binding sites described by a motif. More documentation is under preparation and will be make available soon at http://centipede.uchicago.edu

AuthorJacob F Degner, Roger Pique-Regi
Date of publicationNone
MaintainerRoger Pique-Regi <rpique@uchicago.edu>
LicenseGPL
Version1.2
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CENTIPEDE", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

CENTIPEDE-package: CENTIPEDE a probabilistic model for learning DNaseI...
fitCentipede: CENTIPEDE core function
imageCutSites: Plots and image with the cleavage pattern
plotProfile: Plots a footprint estimated by Centipede
See all...

All man pages Function index File listing

Man pages

CENTIPEDE-package: CENTIPEDE a probabilistic model for learning DNaseI...
fitCentipede: CENTIPEDE core function
imageCutSites: Plots and image with the cleavage pattern
plotProfile: Plots a footprint estimated by Centipede

Functions

CENTIPEDE Man page
CENTIPEDE-package Man page
Centipede Man page
centipede Man page
fitCentipede Man page Source code
imageCutSites Man page Source code
imageCutSitesCombined Man page Source code
plotProfile Man page Source code

Files

NAMESPACE
data
data/NRSF_Anno.rda
data/NRSFcuts.rda
R
R/plotProfiles.R
R/fitCentipede.R
R/imageCutSites.R
DESCRIPTION
man
man/CENTIPEDE-package.Rd
man/plotProfile.Rd
man/fitCentipede.Rd
man/imageCutSites.Rd
CENTIPEDE documentation built on May 21, 2017, 4:08 a.m.

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