CLAG: An unsupervised non hierarchical clustering algorithm handling biological data

CLAG (for CLusters AGgregation) is an unsupervised non hierarchical clustering algorithm designed to cluster a large variety of biological data and to provide a clustered matrix and numerical values indicating cluster strength. CLAG clusterizes correlation matrices for residues in protein families, gene-expression and miRNA data related to various cancer types, sets of species described by multidimensional vectors of characters, binary matrices. It does not ask to all data points to cluster and it converges yielding the same result at each run. Its simplicity and speed allows it to run on reasonably large datasets.

AuthorLinda DIB, Raphael CHAMPEIMONT, Alessandra CARBONE
Date of publication2013-09-13 08:48:03
MaintainerRaphael CHAMPEIMONT <raphael.champeimont@upmc.fr>
LicenseBSD_2_clause + file LICENSE | GPL (>= 2)
Version2.18.1
http://clag.r-forge.r-project.org/

View on R-Forge

Files

DESCRIPTION
LICENSE
NAMESPACE
NEWS
R
R/CLAG.R R/CLAG_compareclust.R
build
build/vignette.rds
data
data/BREAST.rda
data/DIM128.rda
data/DIM128_subset.rda
data/GLOBINE.rda
inst
inst/Perl
inst/Perl/TOOLCLAG-minimal
inst/Perl/TOOLCLAG-minimal/AnyMatrix
inst/Perl/TOOLCLAG-minimal/AnyMatrix/1-CoEvScoring.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/2-MatrixNONClusterized.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/3-MatrixClusterized.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/3-MatrixClusterizedAggregation.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/4-MatrixClusterizedParam.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/5-CallNeato.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/Aggregation.pl
inst/Perl/TOOLCLAG-minimal/AnyMatrix/exe-RCommand.pl
inst/Perl/TOOLCLAG-minimal/Binary
inst/Perl/TOOLCLAG-minimal/Binary/1-CoEvScoring.pl
inst/Perl/TOOLCLAG-minimal/Binary/2-MatrixNONClusterized.pl
inst/Perl/TOOLCLAG-minimal/Binary/3-MatrixClusterized.pl
inst/Perl/TOOLCLAG-minimal/Binary/3-MatrixClusterizedAggregation.pl
inst/Perl/TOOLCLAG-minimal/Binary/4-MatrixClusterizedParam.pl
inst/Perl/TOOLCLAG-minimal/Binary/5-CallNeato.pl
inst/Perl/TOOLCLAG-minimal/Binary/Aggregation.pl
inst/Perl/TOOLCLAG-minimal/Binary/exe-RCommand.pl
inst/Perl/TOOLCLAG-minimal/LICENSE.txt
inst/Perl/TOOLCLAG-minimal/README.txt
inst/Perl/TOOLCLAG-minimal/SPECIFIC
inst/Perl/TOOLCLAG-minimal/SPECIFIC/1-CoEvScoring.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/2-MatrixNONClusterized.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/3-MatrixClusterized.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/3-MatrixClusterizedAggregation.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/4-MatrixClusterizedParam.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/5-CallNeato.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/Aggregation.pl
inst/Perl/TOOLCLAG-minimal/SPECIFIC/exe-RCommand.pl
inst/Perl/TOOLCLAG-minimal/exe-RCommand.pl
inst/doc
inst/doc/CLAG-tutorial.R
inst/doc/CLAG-tutorial.Rnw
inst/doc/CLAG-tutorial.pdf
man
man/BREAST.Rd man/CLAG.clust.Rd man/DIM128.Rd man/DIM128_subset.Rd man/GLOBINE.Rd man/compareClusterings.Rd man/mapClusterings.Rd
vignettes
vignettes/CLAG-tutorial.Rnw
vignettes/CLAG.bib

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