ClassDiscovery: Classes and Methods for "Class Discovery" with Microarrays or Proteomics

The ClassDiscovery package defines the classes used for "class discovery" problems in the OOMPA project. Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.

AuthorKevin R. Coombes
Date of publication2016-05-10 19:24:02
MaintainerKevin R. Coombes <krc@silicovore.com>
LicenseApache License (== 2.0)
Version3.3.3
http://oompa.r-forge.r-project.org/

View on R-Forge

Files in this package

ClassDiscovery/DESCRIPTION
ClassDiscovery/NAMESPACE
ClassDiscovery/NEWS
ClassDiscovery/R
ClassDiscovery/R/cd00-generics.R ClassDiscovery/R/cd01-distance.R ClassDiscovery/R/cd02-cluster.R ClassDiscovery/R/cd03-bootclust.R ClassDiscovery/R/cd04-perclust.R ClassDiscovery/R/cd05-gene-sample-pca.R ClassDiscovery/R/cd06-heatmap.R ClassDiscovery/R/cd07-mosiac.R ClassDiscovery/R/cd08-pcanova.R
ClassDiscovery/TODO
ClassDiscovery/build
ClassDiscovery/build/vignette.rds
ClassDiscovery/inst
ClassDiscovery/inst/doc
ClassDiscovery/inst/doc/maha-test.R
ClassDiscovery/inst/doc/maha-test.Rnw
ClassDiscovery/inst/doc/maha-test.pdf
ClassDiscovery/inst/doc/oompa-cd.R
ClassDiscovery/inst/doc/oompa-cd.Rnw
ClassDiscovery/inst/doc/oompa-cd.pdf
ClassDiscovery/man
ClassDiscovery/man/cd01-0-distanceMatrix.Rd ClassDiscovery/man/cd02-0-plotColoredClusters.Rd ClassDiscovery/man/cd02-1-cluster3.Rd ClassDiscovery/man/cd03-0-ClusterTest-class.Rd ClassDiscovery/man/cd03-1-BootstrapClusterTest-class.Rd ClassDiscovery/man/cd03-2-hclust-class.Rd ClassDiscovery/man/cd03-3-justClusters.Rd ClassDiscovery/man/cd04-0-PerturbationClusterTest-class.Rd ClassDiscovery/man/cd05-0-SamplePCA-class.Rd ClassDiscovery/man/cd05-1-GenePCA-class.Rd ClassDiscovery/man/cd06-0-aspectHeatmap.Rd ClassDiscovery/man/cd07-0-Mosaic-class.Rd ClassDiscovery/man/cd08-0-PCanova-class.Rd ClassDiscovery/man/cd10-0-maha.Rd
ClassDiscovery/tests
ClassDiscovery/tests/exprSet-example.R
ClassDiscovery/tests/exprSet-example.Rout.save
ClassDiscovery/tests/test00-color.R
ClassDiscovery/tests/test00-color.Rout.save
ClassDiscovery/tests/test01-distance.R
ClassDiscovery/tests/test01-distance.Rout.save
ClassDiscovery/tests/test02-cluster.R
ClassDiscovery/tests/test02-cluster.Rout.save
ClassDiscovery/tests/test02.1-just.R
ClassDiscovery/tests/test02.1-just.Rout.save
ClassDiscovery/tests/test03-boot.R
ClassDiscovery/tests/test03-boot.Rout.save
ClassDiscovery/tests/test04-perturb.R
ClassDiscovery/tests/test04-perturb.Rout.save
ClassDiscovery/tests/test04.1-gpca.R
ClassDiscovery/tests/test04.1-gpca.Rout.save
ClassDiscovery/tests/test05-spca.R
ClassDiscovery/tests/test05-spca.Rout.save
ClassDiscovery/tests/test06-mosaic.R
ClassDiscovery/tests/test06-mosaic.Rout.save
ClassDiscovery/tests/test07-pcanova.R
ClassDiscovery/tests/test07-pcanova.Rout.save
ClassDiscovery/vignettes
ClassDiscovery/vignettes/maha-test.Rnw
ClassDiscovery/vignettes/oompa-cd.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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