Clustericat: This package performs clustering for categorical dataset.

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This package performs clustering for categorical data-set by the block model extension of the latent class model. It contains a function clustericat() performing the clustering on categorical data-set and returns an object of appropriate class (refer to documentation of clustcat). The package also provides tool functions like summary(), summary_dependencies() and plot() to summarize results, to present the main conditional dependencies, to visualize the parameters respectively.

Author
Matthieu Marbac & Christophe Biernacki & Vincent Vandewalle
Date of publication
2014-08-13 13:33:09
Maintainer
Matthieu Marbac <matthieu.marbac-lourdelle@inria.fr>
License
GPL (>=2)
Version
0.5

View on R-Forge

Man pages

clustcat-class
clustcat output objects
clustercat
clustercat function
Clustericat
Clustericat Package
dentist
Dentist diagnosis data set
parameterscat-class
parameterscat output objects
partitioncat
partitioncat function
plot-methods
Plot function.
resultscat-class
resultscat output objects
strategycat
strategycat function
strategycat-class
strategycat input/output objects
summary_dependencies
Summary Dependencies function.
summary-methods
Summary function.

Files in this package

Clustericat/DESCRIPTION
Clustericat/Makefile
Clustericat/NAMESPACE
Clustericat/R
Clustericat/R/Clustericat.R
Clustericat/R/Clustericatclustering.R
Clustericat/R/optionclasses.R
Clustericat/R/plot.R
Clustericat/R/summary.R
Clustericat/R/summary_dependencies.R
Clustericat/R/tools.R
Clustericat/data
Clustericat/data/dentist.rda
Clustericat/inst
Clustericat/inst/COPYRIGHTS
Clustericat/man
Clustericat/man/Clustericat.Rd
Clustericat/man/clustcat-class.Rd
Clustericat/man/clustercat.Rd
Clustericat/man/dentist.Rd
Clustericat/man/parameterscat-class.Rd
Clustericat/man/partitioncat.Rd
Clustericat/man/plot-methods.Rd
Clustericat/man/resultscat-class.Rd
Clustericat/man/strategycat-class.Rd
Clustericat/man/strategycat.Rd
Clustericat/man/summary-methods.Rd
Clustericat/man/summary_dependencies.Rd
Clustericat/src
Clustericat/src/BME
Clustericat/src/BME/src
Clustericat/src/BME/src/MCMCAlgo.cpp
Clustericat/src/BME/src/MCMCAlgo.h
Clustericat/src/BME/src/datafile.cpp
Clustericat/src/BME/src/datafile.h
Clustericat/src/BME/src/model.cpp
Clustericat/src/BME/src/model.h
Clustericat/src/BME/src/paramblock.cpp
Clustericat/src/BME/src/paramblock.h
Clustericat/src/BME/src/parameters.cpp
Clustericat/src/BME/src/parameters.h
Clustericat/src/BMEclustering.cpp
Clustericat/src/BMEclustering.h
Clustericat/src/Makevars
Clustericat/src/Makevars.win
Clustericat/src/conversion.h
Clustericat/src/eigen
Clustericat/src/eigen/.hg_archival.txt
Clustericat/src/eigen/.hgeol
Clustericat/src/eigen/.krazy
Clustericat/src/eigen/Eigen
Clustericat/src/eigen/Eigen/Array
Clustericat/src/eigen/Eigen/CMakeLists.txt
Clustericat/src/eigen/Eigen/Cholesky
Clustericat/src/eigen/Eigen/Core
Clustericat/src/eigen/Eigen/Dense
Clustericat/src/eigen/Eigen/Eigen
Clustericat/src/eigen/Eigen/Eigen2Support
Clustericat/src/eigen/Eigen/Eigenvalues
Clustericat/src/eigen/Eigen/Geometry
Clustericat/src/eigen/Eigen/Householder
Clustericat/src/eigen/Eigen/Jacobi
Clustericat/src/eigen/Eigen/LU
Clustericat/src/eigen/Eigen/LeastSquares
Clustericat/src/eigen/Eigen/QR
Clustericat/src/eigen/Eigen/QtAlignedMalloc
Clustericat/src/eigen/Eigen/SVD
Clustericat/src/eigen/Eigen/Sparse
Clustericat/src/eigen/Eigen/StdDeque
Clustericat/src/eigen/Eigen/StdList
Clustericat/src/eigen/Eigen/StdVector
Clustericat/src/eigen/Eigen/src
Clustericat/src/eigen/Eigen/src/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Cholesky
Clustericat/src/eigen/Eigen/src/Cholesky/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Cholesky/LDLT.h
Clustericat/src/eigen/Eigen/src/Cholesky/LLT.h
Clustericat/src/eigen/Eigen/src/Core
Clustericat/src/eigen/Eigen/src/Core/Array.h
Clustericat/src/eigen/Eigen/src/Core/ArrayBase.h
Clustericat/src/eigen/Eigen/src/Core/ArrayWrapper.h
Clustericat/src/eigen/Eigen/src/Core/Assign.h
Clustericat/src/eigen/Eigen/src/Core/BandMatrix.h
Clustericat/src/eigen/Eigen/src/Core/Block.h
Clustericat/src/eigen/Eigen/src/Core/BooleanRedux.h
Clustericat/src/eigen/Eigen/src/Core/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/CommaInitializer.h
Clustericat/src/eigen/Eigen/src/Core/CwiseBinaryOp.h
Clustericat/src/eigen/Eigen/src/Core/CwiseNullaryOp.h
Clustericat/src/eigen/Eigen/src/Core/CwiseUnaryOp.h
Clustericat/src/eigen/Eigen/src/Core/CwiseUnaryView.h
Clustericat/src/eigen/Eigen/src/Core/DenseBase.h
Clustericat/src/eigen/Eigen/src/Core/DenseCoeffsBase.h
Clustericat/src/eigen/Eigen/src/Core/DenseStorage.h
Clustericat/src/eigen/Eigen/src/Core/Diagonal.h
Clustericat/src/eigen/Eigen/src/Core/DiagonalMatrix.h
Clustericat/src/eigen/Eigen/src/Core/DiagonalProduct.h
Clustericat/src/eigen/Eigen/src/Core/Dot.h
Clustericat/src/eigen/Eigen/src/Core/EigenBase.h
Clustericat/src/eigen/Eigen/src/Core/Flagged.h
Clustericat/src/eigen/Eigen/src/Core/ForceAlignedAccess.h
Clustericat/src/eigen/Eigen/src/Core/Functors.h
Clustericat/src/eigen/Eigen/src/Core/Fuzzy.h
Clustericat/src/eigen/Eigen/src/Core/GenericPacketMath.h
Clustericat/src/eigen/Eigen/src/Core/GlobalFunctions.h
Clustericat/src/eigen/Eigen/src/Core/IO.h
Clustericat/src/eigen/Eigen/src/Core/Map.h
Clustericat/src/eigen/Eigen/src/Core/MapBase.h
Clustericat/src/eigen/Eigen/src/Core/MathFunctions.h
Clustericat/src/eigen/Eigen/src/Core/Matrix.h
Clustericat/src/eigen/Eigen/src/Core/MatrixBase.h
Clustericat/src/eigen/Eigen/src/Core/NestByValue.h
Clustericat/src/eigen/Eigen/src/Core/NoAlias.h
Clustericat/src/eigen/Eigen/src/Core/NumTraits.h
Clustericat/src/eigen/Eigen/src/Core/PermutationMatrix.h
Clustericat/src/eigen/Eigen/src/Core/PlainObjectBase.h
Clustericat/src/eigen/Eigen/src/Core/Product.h
Clustericat/src/eigen/Eigen/src/Core/ProductBase.h
Clustericat/src/eigen/Eigen/src/Core/Random.h
Clustericat/src/eigen/Eigen/src/Core/Redux.h
Clustericat/src/eigen/Eigen/src/Core/Replicate.h
Clustericat/src/eigen/Eigen/src/Core/ReturnByValue.h
Clustericat/src/eigen/Eigen/src/Core/Reverse.h
Clustericat/src/eigen/Eigen/src/Core/Select.h
Clustericat/src/eigen/Eigen/src/Core/SelfAdjointView.h
Clustericat/src/eigen/Eigen/src/Core/SelfCwiseBinaryOp.h
Clustericat/src/eigen/Eigen/src/Core/SolveTriangular.h
Clustericat/src/eigen/Eigen/src/Core/StableNorm.h
Clustericat/src/eigen/Eigen/src/Core/Stride.h
Clustericat/src/eigen/Eigen/src/Core/Swap.h
Clustericat/src/eigen/Eigen/src/Core/Transpose.h
Clustericat/src/eigen/Eigen/src/Core/Transpositions.h
Clustericat/src/eigen/Eigen/src/Core/TriangularMatrix.h
Clustericat/src/eigen/Eigen/src/Core/VectorBlock.h
Clustericat/src/eigen/Eigen/src/Core/VectorwiseOp.h
Clustericat/src/eigen/Eigen/src/Core/Visitor.h
Clustericat/src/eigen/Eigen/src/Core/arch
Clustericat/src/eigen/Eigen/src/Core/arch/AltiVec
Clustericat/src/eigen/Eigen/src/Core/arch/AltiVec/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/arch/AltiVec/Complex.h
Clustericat/src/eigen/Eigen/src/Core/arch/AltiVec/PacketMath.h
Clustericat/src/eigen/Eigen/src/Core/arch/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/arch/Default
Clustericat/src/eigen/Eigen/src/Core/arch/Default/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/arch/Default/Settings.h
Clustericat/src/eigen/Eigen/src/Core/arch/NEON
Clustericat/src/eigen/Eigen/src/Core/arch/NEON/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/arch/NEON/Complex.h
Clustericat/src/eigen/Eigen/src/Core/arch/NEON/PacketMath.h
Clustericat/src/eigen/Eigen/src/Core/arch/SSE
Clustericat/src/eigen/Eigen/src/Core/arch/SSE/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/arch/SSE/Complex.h
Clustericat/src/eigen/Eigen/src/Core/arch/SSE/MathFunctions.h
Clustericat/src/eigen/Eigen/src/Core/arch/SSE/PacketMath.h
Clustericat/src/eigen/Eigen/src/Core/products
Clustericat/src/eigen/Eigen/src/Core/products/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/products/CoeffBasedProduct.h
Clustericat/src/eigen/Eigen/src/Core/products/GeneralBlockPanelKernel.h
Clustericat/src/eigen/Eigen/src/Core/products/GeneralMatrixMatrix.h
Clustericat/src/eigen/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
Clustericat/src/eigen/Eigen/src/Core/products/GeneralMatrixVector.h
Clustericat/src/eigen/Eigen/src/Core/products/Parallelizer.h
Clustericat/src/eigen/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
Clustericat/src/eigen/Eigen/src/Core/products/SelfadjointMatrixVector.h
Clustericat/src/eigen/Eigen/src/Core/products/SelfadjointProduct.h
Clustericat/src/eigen/Eigen/src/Core/products/SelfadjointRank2Update.h
Clustericat/src/eigen/Eigen/src/Core/products/TriangularMatrixMatrix.h
Clustericat/src/eigen/Eigen/src/Core/products/TriangularMatrixVector.h
Clustericat/src/eigen/Eigen/src/Core/products/TriangularSolverMatrix.h
Clustericat/src/eigen/Eigen/src/Core/products/TriangularSolverVector.h
Clustericat/src/eigen/Eigen/src/Core/util
Clustericat/src/eigen/Eigen/src/Core/util/BlasUtil.h
Clustericat/src/eigen/Eigen/src/Core/util/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Core/util/Constants.h
Clustericat/src/eigen/Eigen/src/Core/util/DisableStupidWarnings.h
Clustericat/src/eigen/Eigen/src/Core/util/ForwardDeclarations.h
Clustericat/src/eigen/Eigen/src/Core/util/Macros.h
Clustericat/src/eigen/Eigen/src/Core/util/Memory.h
Clustericat/src/eigen/Eigen/src/Core/util/Meta.h
Clustericat/src/eigen/Eigen/src/Core/util/ReenableStupidWarnings.h
Clustericat/src/eigen/Eigen/src/Core/util/StaticAssert.h
Clustericat/src/eigen/Eigen/src/Core/util/XprHelper.h
Clustericat/src/eigen/Eigen/src/Eigen2Support
Clustericat/src/eigen/Eigen/src/Eigen2Support/Block.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Eigen2Support/Cwise.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/CwiseOperators.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/AlignedBox.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/All.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Hyperplane.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/ParametrizedLine.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Quaternion.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Rotation2D.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/RotationBase.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Scaling.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Transform.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Geometry/Translation.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/LU.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Lazy.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/LeastSquares.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Macros.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/MathFunctions.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Memory.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Meta.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/Minor.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/QR.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/SVD.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/TriangularSolver.h
Clustericat/src/eigen/Eigen/src/Eigen2Support/VectorBlock.h
Clustericat/src/eigen/Eigen/src/Eigenvalues
Clustericat/src/eigen/Eigen/src/Eigenvalues/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Eigenvalues/ComplexEigenSolver.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/ComplexSchur.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/EigenSolver.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/EigenvaluesCommon.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/HessenbergDecomposition.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/RealSchur.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
Clustericat/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h
Clustericat/src/eigen/Eigen/src/Geometry
Clustericat/src/eigen/Eigen/src/Geometry/AlignedBox.h
Clustericat/src/eigen/Eigen/src/Geometry/AngleAxis.h
Clustericat/src/eigen/Eigen/src/Geometry/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Geometry/EulerAngles.h
Clustericat/src/eigen/Eigen/src/Geometry/Homogeneous.h
Clustericat/src/eigen/Eigen/src/Geometry/Hyperplane.h
Clustericat/src/eigen/Eigen/src/Geometry/OrthoMethods.h
Clustericat/src/eigen/Eigen/src/Geometry/ParametrizedLine.h
Clustericat/src/eigen/Eigen/src/Geometry/Quaternion.h
Clustericat/src/eigen/Eigen/src/Geometry/Rotation2D.h
Clustericat/src/eigen/Eigen/src/Geometry/RotationBase.h
Clustericat/src/eigen/Eigen/src/Geometry/Scaling.h
Clustericat/src/eigen/Eigen/src/Geometry/Transform.h
Clustericat/src/eigen/Eigen/src/Geometry/Translation.h
Clustericat/src/eigen/Eigen/src/Geometry/Umeyama.h
Clustericat/src/eigen/Eigen/src/Geometry/arch
Clustericat/src/eigen/Eigen/src/Geometry/arch/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Geometry/arch/Geometry_SSE.h
Clustericat/src/eigen/Eigen/src/Householder
Clustericat/src/eigen/Eigen/src/Householder/BlockHouseholder.h
Clustericat/src/eigen/Eigen/src/Householder/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Householder/Householder.h
Clustericat/src/eigen/Eigen/src/Householder/HouseholderSequence.h
Clustericat/src/eigen/Eigen/src/Jacobi
Clustericat/src/eigen/Eigen/src/Jacobi/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Jacobi/Jacobi.h
Clustericat/src/eigen/Eigen/src/LU
Clustericat/src/eigen/Eigen/src/LU/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/LU/Determinant.h
Clustericat/src/eigen/Eigen/src/LU/FullPivLU.h
Clustericat/src/eigen/Eigen/src/LU/Inverse.h
Clustericat/src/eigen/Eigen/src/LU/PartialPivLU.h
Clustericat/src/eigen/Eigen/src/LU/arch
Clustericat/src/eigen/Eigen/src/LU/arch/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/LU/arch/Inverse_SSE.h
Clustericat/src/eigen/Eigen/src/QR
Clustericat/src/eigen/Eigen/src/QR/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/QR/ColPivHouseholderQR.h
Clustericat/src/eigen/Eigen/src/QR/FullPivHouseholderQR.h
Clustericat/src/eigen/Eigen/src/QR/HouseholderQR.h
Clustericat/src/eigen/Eigen/src/SVD
Clustericat/src/eigen/Eigen/src/SVD/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/SVD/JacobiSVD.h
Clustericat/src/eigen/Eigen/src/SVD/UpperBidiagonalization.h
Clustericat/src/eigen/Eigen/src/Sparse
Clustericat/src/eigen/Eigen/src/Sparse/AmbiVector.h
Clustericat/src/eigen/Eigen/src/Sparse/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/Sparse/CompressedStorage.h
Clustericat/src/eigen/Eigen/src/Sparse/CoreIterators.h
Clustericat/src/eigen/Eigen/src/Sparse/DynamicSparseMatrix.h
Clustericat/src/eigen/Eigen/src/Sparse/MappedSparseMatrix.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseAssign.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseBlock.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseCwiseBinaryOp.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseCwiseUnaryOp.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseDenseProduct.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseDiagonalProduct.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseDot.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseFuzzy.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseMatrix.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseMatrixBase.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseProduct.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseRedux.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseSelfAdjointView.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseSparseProduct.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseTranspose.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseTriangularView.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseUtil.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseVector.h
Clustericat/src/eigen/Eigen/src/Sparse/SparseView.h
Clustericat/src/eigen/Eigen/src/Sparse/TriangularSolver.h
Clustericat/src/eigen/Eigen/src/StlSupport
Clustericat/src/eigen/Eigen/src/StlSupport/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/StlSupport/StdDeque.h
Clustericat/src/eigen/Eigen/src/StlSupport/StdList.h
Clustericat/src/eigen/Eigen/src/StlSupport/StdVector.h
Clustericat/src/eigen/Eigen/src/StlSupport/details.h
Clustericat/src/eigen/Eigen/src/misc
Clustericat/src/eigen/Eigen/src/misc/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/misc/Image.h
Clustericat/src/eigen/Eigen/src/misc/Kernel.h
Clustericat/src/eigen/Eigen/src/misc/Solve.h
Clustericat/src/eigen/Eigen/src/plugins
Clustericat/src/eigen/Eigen/src/plugins/ArrayCwiseBinaryOps.h
Clustericat/src/eigen/Eigen/src/plugins/ArrayCwiseUnaryOps.h
Clustericat/src/eigen/Eigen/src/plugins/BlockMethods.h
Clustericat/src/eigen/Eigen/src/plugins/CMakeLists.txt
Clustericat/src/eigen/Eigen/src/plugins/CommonCwiseBinaryOps.h
Clustericat/src/eigen/Eigen/src/plugins/CommonCwiseUnaryOps.h
Clustericat/src/eigen/Eigen/src/plugins/MatrixCwiseBinaryOps.h
Clustericat/src/eigen/Eigen/src/plugins/MatrixCwiseUnaryOps.h