CommEcol: Community Ecology Analyses
Version 1.6.4

Autosimilarity curves, dissimilarity indexes that overweight rare species, phylogenetic and functional (pairwise and multisample) dissimilarity indexes and nestedness for phylogenetic, functional and other diversity metrics. This should be a complement to available packages, particularly 'vegan'.

AuthorAdriano Sanches Melo
Date of publication2016-07-28 21:06:33
MaintainerAdriano Sanches Melo <asm.adrimelo@gmail.com>
LicenseGPL-2
Version1.6.4
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("CommEcol", repos="http://R-Forge.R-project.org")

Popular man pages

autosimi: Autosimilarity curve of species community data
CommEcol: Community Ecology Analyses
CommEcol-internal: Internal CommEcol objects
dis.chao: Chao et al. dissimilarity indices
dis.nness: NNESS and NESS dissimilarity indices
japi: Macroinvertebrate morphospecies living on stones of a stream...
treeNodf: Tree-like Nestedness of Ecological Metacommunities
See all...

All man pages Function index File listing

Man pages

autosimi: Autosimilarity curve of species community data
CommEcol: Community Ecology Analyses
CommEcol-internal: Internal CommEcol objects
compas: Simulation of species community data along gradients
dis.chao: Chao et al. dissimilarity indices
dis.goodall: Goodall dissimilarity index
dis.nness: NNESS and NESS dissimilarity indices
japi: Macroinvertebrate morphospecies living on stones of a stream...
part.m.tree: Partition of multi-sample dissimilarity indices using...
part.p.tree: Partition of pair-wise dissimilarity indices using...
select.window: Select cells inside a defined window of a gridded dataset
sites4.6: Artificial dataset containing 4 samples [rows] and 6...
sites5.6: Artificial dataset containing 5 samples [rows] and 6...
sites6.6: Artificial dataset containing 6 samples [rows] and 6...
stairs6: Example of phylogenetic tree containing 6 species.
tree6: Example of phylogenetic tree containing 6 species.
treeNodf: Tree-like Nestedness of Ecological Metacommunities

Functions

CommEcol Man page
CommEcol-package Man page
autosimi Man page Source code
compas Man page Source code
dis.chao Man page Source code
dis.goodall Man page Source code
dis.nness Man page Source code
dis.nness.find.m Man page Source code
japi Man page
part.m.tree Man page Source code
part.p.tree Man page Source code
print.treeNodf Source code
print.treeNodfTest Source code
rgedit.lastline2clipboard Source code
select.window Man page Source code
sites4.6 Man page
sites5.6 Man page
sites6.6 Man page
stairs6 Man page
tree6 Man page
treeNodf Man page Source code
treeNodfOne Source code
treeNodfTest Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/anRpackage-internal.R
R/autosimi.R
R/compas.R
R/dis.chao.R
R/dis.goodall.R
R/dis.nness.R
R/dis.nness.find.m.R
R/part.m.tree.R
R/part.p.tree.R
R/print.treeNodf.R
R/print.treeNodfTest.R
R/select.window.R
R/treeNodf.R
R/treeNodfOne.R
R/treeNodfTest.R
data
data/japi.rda
data/sites4.6.rda
data/sites5.6.rda
data/sites6.6.rda
data/stairs6.rda
data/tree6.rda
man
man/CommEcol-internal.Rd
man/CommEcol.Rd
man/autosimi.Rd
man/compas.Rd
man/dis.chao.Rd
man/dis.goodall.Rd
man/dis.nness.Rd
man/japi.Rd
man/part.m.tree.Rd
man/part.p.tree.Rd
man/select.window.Rd
man/sites4.6.Rd
man/sites5.6.Rd
man/sites6.6.Rd
man/stairs6.Rd
man/tree6.Rd
man/treeNodf.Rd
CommEcol documentation built on May 21, 2017, 3:57 a.m.

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