CommEcol: Community Ecology Analyses

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Autosimilarity curves, dissimilarity indexes that overweight rare species, phylogenetic and functional (pairwise and multisample) dissimilarity indexes and nestedness for phylogenetic, functional and other diversity metrics. This should be a complement to available packages, particularly 'vegan'.

Author
Adriano Sanches Melo
Date of publication
2016-07-28 21:06:33
Maintainer
Adriano Sanches Melo <asm.adrimelo@gmail.com>
License
GPL-2
Version
1.6.4

View on R-Forge

Man pages

autosimi
Autosimilarity curve of species community data
CommEcol
Community Ecology Analyses
CommEcol-internal
Internal CommEcol objects
compas
Simulation of species community data along gradients
dis.chao
Chao et al. dissimilarity indices
dis.goodall
Goodall dissimilarity index
dis.nness
NNESS and NESS dissimilarity indices
japi
Macroinvertebrate morphospecies living on stones of a stream...
part.m.tree
Partition of multi-sample dissimilarity indices using...
part.p.tree
Partition of pair-wise dissimilarity indices using...
select.window
Select cells inside a defined window of a gridded dataset
sites4.6
Artificial dataset containing 4 samples [rows] and 6...
sites5.6
Artificial dataset containing 5 samples [rows] and 6...
sites6.6
Artificial dataset containing 6 samples [rows] and 6...
stairs6
Example of phylogenetic tree containing 6 species.
tree6
Example of phylogenetic tree containing 6 species.
treeNodf
Tree-like Nestedness of Ecological Metacommunities

Files in this package

CommEcol/DESCRIPTION
CommEcol/NAMESPACE
CommEcol/R
CommEcol/R/anRpackage-internal.R
CommEcol/R/autosimi.R
CommEcol/R/compas.R
CommEcol/R/dis.chao.R
CommEcol/R/dis.goodall.R
CommEcol/R/dis.nness.R
CommEcol/R/dis.nness.find.m.R
CommEcol/R/part.m.tree.R
CommEcol/R/part.p.tree.R
CommEcol/R/print.treeNodf.R
CommEcol/R/print.treeNodfTest.R
CommEcol/R/select.window.R
CommEcol/R/treeNodf.R
CommEcol/R/treeNodfOne.R
CommEcol/R/treeNodfTest.R
CommEcol/data
CommEcol/data/japi.rda
CommEcol/data/sites4.6.rda
CommEcol/data/sites5.6.rda
CommEcol/data/sites6.6.rda
CommEcol/data/stairs6.rda
CommEcol/data/tree6.rda
CommEcol/man
CommEcol/man/CommEcol-internal.Rd
CommEcol/man/CommEcol.Rd
CommEcol/man/autosimi.Rd
CommEcol/man/compas.Rd
CommEcol/man/dis.chao.Rd
CommEcol/man/dis.goodall.Rd
CommEcol/man/dis.nness.Rd
CommEcol/man/japi.Rd
CommEcol/man/part.m.tree.Rd
CommEcol/man/part.p.tree.Rd
CommEcol/man/select.window.Rd
CommEcol/man/sites4.6.Rd
CommEcol/man/sites5.6.Rd
CommEcol/man/sites6.6.Rd
CommEcol/man/stairs6.Rd
CommEcol/man/tree6.Rd
CommEcol/man/treeNodf.Rd