Corbi: Collection of Rudimentary Bioinformatics Tools

Provides a bundle of basic and fundamental bioinformatics tools, such as network querying and alignment, subnetwork extraction and search, network biomarker identification.

AuthorLing-Yun Wu [aut, cre], Qiang Huang [aut], Duanchen Sun [aut]
Date of publication2016-09-19 03:34:28
MaintainerLing-Yun Wu <wulingyun@gmail.com>
LicenseGPL (>= 2)
Version0.4-1
https://github.com/wulingyun/Corbi

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Files

DESCRIPTION
NAMESPACE
R
R/Corbi-package.R R/markrank.R R/multihyper.R R/net_align.R R/net_functions.R R/net_query.R R/net_query_batch.R R/pro_align.R R/subnets.R R/utils.R
README.md
man
man/Corbi-package.Rd man/best_subnets.Rd man/column.Rd man/extend_subnets.Rd man/get_shortest_distances.Rd man/get_subnets.Rd man/kappa_score.Rd man/markrank.Rd man/net_align.Rd man/net_query.Rd man/nnzero.Rd man/read_net.Rd man/rmultihyper.Rd man/submatrix.Rd man/write_net.Rd
src
src/Corbi.cpp
src/Corbi.h
src/NetQuery.cpp
src/ProAlign.cpp
src/Subnets.cpp
src/misc.cpp
src/misc.h
src/multihyper.cpp
tests
tests/markrank
tests/markrank/answer.RData
tests/markrank/dataset.RData
tests/markrank/de_list.RData
tests/markrank/search_net.R
tests/markrank/subnetwork.txt
tests/net_align
tests/net_align/answer1.txt
tests/net_align/answer1_uni.txt
tests/net_align/net1.txt
tests/net_align/net2.txt
tests/net_align/net3.txt
tests/net_align/sim.txt
tests/net_query
tests/net_query/answer1.txt
tests/net_query/answer2.txt
tests/net_query/query1.txt
tests/net_query/query2.txt
tests/net_query/sim.txt
tests/net_query/target.txt
tests/test_markrank.R tests/test_net_align.R tests/test_net_query.R

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