Corbi: Collection of Rudimentary Bioinformatics Tools

Provides a bundle of basic and fundamental bioinformatics tools, such as network querying and alignment, subnetwork extraction and search, network biomarker identification.

AuthorLing-Yun Wu [aut, cre], Qiang Huang [aut], Duanchen Sun [aut]
Date of publication2016-09-19 03:34:28
MaintainerLing-Yun Wu <wulingyun@gmail.com>
LicenseGPL (>= 2)
Version0.4-1
https://github.com/wulingyun/Corbi

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Files in this package

Corbi/DESCRIPTION
Corbi/NAMESPACE
Corbi/R
Corbi/R/Corbi-package.R Corbi/R/markrank.R Corbi/R/multihyper.R Corbi/R/net_align.R Corbi/R/net_functions.R Corbi/R/net_query.R Corbi/R/net_query_batch.R Corbi/R/pro_align.R Corbi/R/subnets.R Corbi/R/utils.R
Corbi/README.md
Corbi/man
Corbi/man/Corbi-package.Rd Corbi/man/best_subnets.Rd Corbi/man/column.Rd Corbi/man/extend_subnets.Rd Corbi/man/get_shortest_distances.Rd Corbi/man/get_subnets.Rd Corbi/man/kappa_score.Rd Corbi/man/markrank.Rd Corbi/man/net_align.Rd Corbi/man/net_query.Rd Corbi/man/nnzero.Rd Corbi/man/read_net.Rd Corbi/man/rmultihyper.Rd Corbi/man/submatrix.Rd Corbi/man/write_net.Rd
Corbi/src
Corbi/src/Corbi.cpp
Corbi/src/Corbi.h
Corbi/src/NetQuery.cpp
Corbi/src/ProAlign.cpp
Corbi/src/Subnets.cpp
Corbi/src/misc.cpp
Corbi/src/misc.h
Corbi/src/multihyper.cpp
Corbi/tests
Corbi/tests/markrank
Corbi/tests/markrank/answer.RData
Corbi/tests/markrank/dataset.RData
Corbi/tests/markrank/de_list.RData
Corbi/tests/markrank/search_net.R
Corbi/tests/markrank/subnetwork.txt
Corbi/tests/net_align
Corbi/tests/net_align/answer1.txt
Corbi/tests/net_align/answer1_uni.txt
Corbi/tests/net_align/net1.txt
Corbi/tests/net_align/net2.txt
Corbi/tests/net_align/net3.txt
Corbi/tests/net_align/sim.txt
Corbi/tests/net_query
Corbi/tests/net_query/answer1.txt
Corbi/tests/net_query/answer2.txt
Corbi/tests/net_query/query1.txt
Corbi/tests/net_query/query2.txt
Corbi/tests/net_query/sim.txt
Corbi/tests/net_query/target.txt
Corbi/tests/test_markrank.R
Corbi/tests/test_net_align.R
Corbi/tests/test_net_query.R

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