CorrBin: Nonparametrics with Clustered Binary and Multinomial Data

This package implements non-parametric analyses for clustered binary and multinomial data. The elements of the cluster are assumed exchangeable, and identical joint distribution (also known as marginal compatibility, or reproducibility) is assumed for clusters of different sizes. A trend test based on stochastic ordering is implemented.

Author
Aniko Szabo [aut, cre]
Date of publication
2016-05-05 14:48:17
Maintainer
Aniko Szabo <aszabo@mcw.edu>
License
GPL (>=2)
Version
1.5

View on R-Forge

Man pages

CBData
Create a 'CBdata' object from a data frame.
CMData
Create a 'CMdata' object from a data frame.
CorrBin-internal
Internal CorrBin objects
CorrBin-package
Nonparameterics for Correlated Binary and Multinomial Data
dehp
Developmental toxicology study of DEHP in mice
egde
EGDE data
Extract
Extract from a CBData or CMData object
GEE.trend.test
GEE-based trend test
jointprobs
Estimate joint event probabilities for multinomial data
mc.est
Distribution of the number of responses assuming marginal...
mc.test.chisq
Test the assumption of marginal compatibility
multi.corr
Extract correlation coefficients from joint probability...
multinom.gen
Functions for generating multinomial outcomes
NOSTASOT
Finding the NOSTASOT dose
pdf
Parametric distributions for correlated binary data
ran.CBData
Generate random correlated binary data
ran.CMData
Generate a random CMData object
read.CBData
Read data from external file into a CBData object
read.CMData
Read data from external file into a CMData object
RS.trend.test
Rao-Scott trend test
shelltox
Shell Toxicology data
soControl
Control values for order-constrained fit
SO.LRT
Likelihood-ratio test statistic
SO.mc.est
Order-restricted MLE assuming marginal compatibility
SO.trend.test
Likelihood ratio test of stochastic ordering
trend.test
Test for increasing trend with correlated binary data
uniprobs
Extract univariate marginal probabilities from joint...
unwrap
Unwrap a clustered object

Files in this package

CorrBin/DESCRIPTION
CorrBin/NAMESPACE
CorrBin/R
CorrBin/R/CBData.R
CorrBin/R/CMData.R
CorrBin/R/CorrBin-package.R
CorrBin/R/ExchMultinomial.R
CorrBin/R/Reprod.R
CorrBin/R/aaa-generics.R
CorrBin/R/aaa-generics1.R
CorrBin/build
CorrBin/build/vignette.rds
CorrBin/data
CorrBin/data/dehp.rda
CorrBin/data/egde.rda
CorrBin/data/shelltox.rda
CorrBin/inst
CorrBin/inst/doc
CorrBin/inst/doc/CorrBinVignette.R
CorrBin/inst/doc/CorrBinVignette.Rnw
CorrBin/inst/doc/CorrBinVignette.pdf
CorrBin/man
CorrBin/man/CBData.Rd
CorrBin/man/CMData.Rd
CorrBin/man/CorrBin-internal.Rd
CorrBin/man/CorrBin-package.Rd
CorrBin/man/Extract.Rd
CorrBin/man/GEE.trend.test.Rd
CorrBin/man/NOSTASOT.Rd
CorrBin/man/RS.trend.test.Rd
CorrBin/man/SO.LRT.Rd
CorrBin/man/SO.mc.est.Rd
CorrBin/man/SO.trend.test.Rd
CorrBin/man/dehp.Rd
CorrBin/man/egde.Rd
CorrBin/man/jointprobs.Rd
CorrBin/man/mc.est.Rd
CorrBin/man/mc.test.chisq.Rd
CorrBin/man/multi.corr.Rd
CorrBin/man/multinom.gen.Rd
CorrBin/man/pdf.Rd
CorrBin/man/ran.CBData.Rd
CorrBin/man/ran.CMData.Rd
CorrBin/man/read.CBData.Rd
CorrBin/man/read.CMData.Rd
CorrBin/man/shelltox.Rd
CorrBin/man/soControl.Rd
CorrBin/man/trend.test.Rd
CorrBin/man/uniprobs.Rd
CorrBin/man/unwrap.Rd
CorrBin/src
CorrBin/src/ReprodCalcs.c
CorrBin/vignettes
CorrBin/vignettes/CorrBinVignette.Rnw
CorrBin/vignettes/ShellTox.txt