DCluster: Functions for the Detection of Spatial Clusters of Diseases

A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics.

AuthorVirgilio Gmez-Rubio, Juan Ferrndiz-Ferragud and Antonio Lpez-Qulez, with contributions by Roger Bivand.
Date of publication2015-03-16 23:30:51
MaintainerVirgilio Gmez-Rubio <Virgilio.Gomez@uclm.es>
LicenseGPL (>= 2)
Version0.2-7

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Man pages

achisq: Another Implementation of Pearson's Chi-square Statistic

achisq.boot: Bootstrap Replicates of Pearson's Chi-square Statistic

achisq.stat: Another Implementation of Pearson's Chi-square Statistic

besagnewell: Besag and Newell's Statistic for Spatial Clustering

besagnewell.boot: Generate Boostrap Replicates of Besag and Newell's Statistic

besagnewell.stat: Besag and Newell's Statistic for Spatial Clustering

bn.iscluster: Clustering Function for Besag and Newell's Method

calculate.mle: Calculate Parameters Involved in Sampling Procedures

DCluster: A Package for the Detection of Spatial Clusters of Diseases...

dcluster.test: Class for Results from a Test for the Detection of Disease...

dean_test: Likelihood Ratio Test and Dean's Tests for Overdispertion

empbaysmooth: Empirical Bayes Smoothing

gearyc: Geary's C Autocorrelation Statistic

gearyc.boot: Generate Bootstrap Replicates of Geary's C Autocorrelation...

gearyc.stat: Compute Geary's C Autocorrelation Statistic

get.knclusters: Get Areas in a Cluster Detected with Kulldorff's Statistic

kn.iscluster: Clustering Function for Kulldorff and Nagarwalla's Statistic

kullnagar: Kulldorff and Nagarwalla's Statistic for Spatial Clustering.

kullnagar.boot: Generate Bootstrap Replicates of Kulldorff and Nagarwalla's...

kullnagar.stat: Kulldorff and Nagarwalla's Statistic for Spatial Clustering.

lognormalEB: Empirical Bayes Smoothing Using a log-Normal Model

moranI: Moran's I Autocorrelation Statistic

moranI.boot: Generate Bootstrap Replicates of Moran's I Autocorrelation...

moranI.stat: Compute Moran's I Autocorrelation Statistic

observed.sim: Randomly Generate Observed Cases from Different Statistical...

opgam: Openshaw's GAM

opgam.iscluster.default: Local Clustering Test Function

pkg-internal: Internal Functions in the DCluster Package.

pottwhitt: Potthoff-Whittinghill's Statistic for Overdispersion

pottwhitt.boot: Bootstrap Replicates of Potthoff-Whittinghill's Statistic

pottwhitt.stat: Compute Potthoff-Whittinghill's Statistic

rmultin: Generate Random Observations from a Multinomial Distribution

stone: Stone's Test

stone.boot: Generate Boostrap Replicates of Stone's Statistic

stone.stat: Compute Stone's Statistic

tango: Tango's Statistic for General Clustering

tango.boot: Generate Bootstrap Replicated of Tango's Statistic

tango.stat: Compute Tango's Statistic for General Clustering

whittermore: Whittermore's Statistic

whittermore.boot: Generate Bootstrap Replicates of Whittermore's Statistic

whittermore.stat: Compute Whittermore's Statistic

Files in this package

DCluster/DESCRIPTION
DCluster/NAMESPACE
DCluster/R
DCluster/R/achisq.boot.R DCluster/R/achisq.pboot.R DCluster/R/achisq.stat.R DCluster/R/besagnewell.boot.R DCluster/R/besagnewell.pboot.R DCluster/R/besagnewell.stat.R DCluster/R/calculate.mle.R DCluster/R/dcluster.test.R DCluster/R/dean_test.R DCluster/R/empbaysmooth.R DCluster/R/gearyc.boot.R DCluster/R/gearyc.pboot.R DCluster/R/gearyc.stat.R DCluster/R/get.knclusters.R DCluster/R/kn.gumbel.iscluster.R DCluster/R/kullnagar.boot.R DCluster/R/kullnagar.pboot.R DCluster/R/kullnagar.stat.R DCluster/R/lognormalEB.R DCluster/R/moranI.boot.R DCluster/R/moranI.pboot.R DCluster/R/moranI.stat.R DCluster/R/multinom.sim.R DCluster/R/negbin.sim.R DCluster/R/opgam.R DCluster/R/poisson.sim.R DCluster/R/pottwhitt.boot.R DCluster/R/pottwhitt.pboot.R DCluster/R/pottwhitt.stat.R DCluster/R/rmultin.R DCluster/R/stone.boot.R DCluster/R/stone.pboot.R DCluster/R/stone.stat.R DCluster/R/tango.boot.R DCluster/R/tango.pboot.R DCluster/R/tango.stat.R DCluster/R/whittermore.boot.R DCluster/R/whittermore.pboot.R DCluster/R/whittermore.stat.R
DCluster/inst
DCluster/inst/CITATION
DCluster/man
DCluster/man/DCluster.Rd DCluster/man/achisq.Rd DCluster/man/achisq.boot.Rd DCluster/man/achisq.stat.Rd DCluster/man/besagnewell.Rd DCluster/man/besagnewell.boot.Rd DCluster/man/besagnewell.stat.Rd DCluster/man/bn.iscluster.Rd DCluster/man/calculate.mle.Rd DCluster/man/dcluster.test.Rd DCluster/man/dean_test.Rd DCluster/man/empbaysmooth.Rd DCluster/man/gearyc.Rd DCluster/man/gearyc.boot.Rd DCluster/man/gearyc.stat.Rd DCluster/man/get.knclusters.Rd DCluster/man/kn.iscluster.Rd DCluster/man/kullnagar.Rd DCluster/man/kullnagar.boot.Rd DCluster/man/kullnagar.stat.Rd DCluster/man/lognormalEB.Rd DCluster/man/moranI.Rd DCluster/man/moranI.boot.Rd DCluster/man/moranI.stat.Rd DCluster/man/observed.sim.Rd DCluster/man/opgam.Rd DCluster/man/opgam.iscluster.default.Rd DCluster/man/pkg-internal.Rd DCluster/man/pottwhitt.Rd DCluster/man/pottwhitt.boot.Rd DCluster/man/pottwhitt.stat.Rd DCluster/man/rmultin.Rd DCluster/man/stone.Rd DCluster/man/stone.boot.Rd DCluster/man/stone.stat.Rd DCluster/man/tango.Rd DCluster/man/tango.boot.Rd DCluster/man/tango.stat.Rd DCluster/man/whittermore.Rd DCluster/man/whittermore.boot.Rd DCluster/man/whittermore.stat.Rd
DCluster/src
DCluster/src/DCluster.h
DCluster/src/GAM.c
DCluster/src/kullnagar.c
DCluster/src/mycumsum.c

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