DetSel: A computer program to detect markers responding to selection
Version 1.0.2

In the new era of population genomics, surveys of genetic polymorphism ("genome scans") offer the opportunity to distinguish locus-specific from genome wide effects at many loci. Identifying presumably neutral regions of the genome that are assumed to be influenced by genome-wide effects only, and excluding presumably selected regions, is therefore critical to infer population demography and phylogenetic history reliably. Conversely, detecting locus-specific effects may help identify those genes that have been, or still are, targeted by natural selection. The software package DetSel has been developed to identify markers that show deviation from neutral expectation in pairwise comparisons of diverging populations.

AuthorRenaud Vitalis <vitalis@supagro.inra.fr>.
Date of publication2013-04-24 11:41:34
MaintainerRenaud Vitalis <vitalis@supagro.inra.fr>
LicenseGPL (>= 2)
Version1.0.2
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("DetSel", repos="http://R-Forge.R-project.org")

Popular man pages

compute.p.values: Compute Empirical p-values
DetSel: A R-package to Detect Marker Loci Responding to Selection
DetSel-internal: Internal DetSel Function
draw.detsel.graphs: Plot Graphical Outputs
genepop.to.detsel: Convert Input File
make.example.files: Generate an Example File in the Working Directory
run.detsel: Create Simulated Data
See all...

All man pages Function index File listing

Man pages

compute.p.values: Compute Empirical p-values
DetSel: A R-package to Detect Marker Loci Responding to Selection
DetSel-internal: Internal DetSel Function
draw.detsel.graphs: Plot Graphical Outputs
genepop.to.detsel: Convert Input File
make.example.files: Generate an Example File in the Working Directory
read.data: Read Data
run.detsel: Create Simulated Data

Functions

DetSel Man page
GetData Man page Source code
SimulDiv Man page Source code
compute.p.values Man page Source code
cumulative.distribution.of.probabilities Man page Source code
draw.detsel.graphs Man page Source code
draw.single.detsel.graph Man page Source code
filled.contour3 Man page Source code
genepop.to.detsel Man page Source code
get.data.information Source code
get.simulation.parameters Man page Source code
make.2D.histogram Man page Source code
make.example.files Man page Source code
read.data Man page Source code
read.genepop.file Source code
run.detsel Man page Source code
write.detsel.file Man page Source code

Files

ChangeLog
DESCRIPTION
NAMESPACE
R
R/DetSel.R
R/filled.contour3.R
inst
inst/data.dat
inst/data.gen
man
man/DetSel-internal.Rd
man/DetSel.Rd
man/compute.p.values.Rd
man/draw.detsel.graphs.Rd
man/genepop.to.detsel.Rd
man/make.example.files.Rd
man/read.data.Rd
man/run.detsel.Rd
src
src/GetData.c
src/SimulDiv.c
DetSel documentation built on May 21, 2017, 3:43 a.m.

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