DetSel: A computer program to detect markers responding to selection

In the new era of population genomics, surveys of genetic polymorphism ("genome scans") offer the opportunity to distinguish locus-specific from genome wide effects at many loci. Identifying presumably neutral regions of the genome that are assumed to be influenced by genome-wide effects only, and excluding presumably selected regions, is therefore critical to infer population demography and phylogenetic history reliably. Conversely, detecting locus-specific effects may help identify those genes that have been, or still are, targeted by natural selection. The software package DetSel has been developed to identify markers that show deviation from neutral expectation in pairwise comparisons of diverging populations.

Author
Renaud Vitalis <vitalis@supagro.inra.fr>.
Date of publication
2013-04-24 11:41:34
Maintainer
Renaud Vitalis <vitalis@supagro.inra.fr>
License
GPL (>= 2)
Version
1.0.2

View on R-Forge

Man pages

compute.p.values
Compute Empirical p-values
DetSel
A R-package to Detect Marker Loci Responding to Selection
DetSel-internal
Internal DetSel Function
draw.detsel.graphs
Plot Graphical Outputs
genepop.to.detsel
Convert Input File
make.example.files
Generate an Example File in the Working Directory
read.data
Read Data
run.detsel
Create Simulated Data

Files in this package

DetSel/ChangeLog
DetSel/DESCRIPTION
DetSel/NAMESPACE
DetSel/R
DetSel/R/DetSel.R
DetSel/R/filled.contour3.R
DetSel/inst
DetSel/inst/data.dat
DetSel/inst/data.gen
DetSel/man
DetSel/man/DetSel-internal.Rd
DetSel/man/DetSel.Rd
DetSel/man/compute.p.values.Rd
DetSel/man/draw.detsel.graphs.Rd
DetSel/man/genepop.to.detsel.Rd
DetSel/man/make.example.files.Rd
DetSel/man/read.data.Rd
DetSel/man/run.detsel.Rd
DetSel/src
DetSel/src/GetData.c
DetSel/src/SimulDiv.c