EBS: Exact Bayesian Segmentation

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Performs an exact Bayesian segmentation on data and returns the probabilities of breakpoints, an ICL criteria, comparison of change-point location, etc.

Author
Alice Cleynen
Date of publication
2016-06-22 13:52:24
Maintainer
Alice Cleynen <alice.cleynen@umontpellier.fr>
License
GPL (>= 2)
Version
3.1

View on R-Forge

Man pages

CardE0
Prior probability of E0
CardMK
Number of segmentations in K segments
Col
Generic function
Col-methods
~~ Methods for Function 'Col' ~~
CompCredibility
Comparison of two profiles with credibility intervals
Data
Generic function
Data-methods
~~ Methods for Function 'Data' ~~
EBSBIC
Model Selection by BIC Criterion
EBS-class
Class "EBS"
EBSDistrib
Probability of kth changepoint in a segmentation in K...
EBSegmentation
Exact Bayesian Segmentation for Poisson, Negative Binomial...
EBSICL
Model Selection by Integrated Completed Likelihood criterion
EBSICLProfiles
Model Selection by Integrated Completed Likelihood criterion
EBS-package
Contains funcions that run exact bayesian changepoint methods...
EBSPlotProba
Plot distribution of changepoints of one profile
EBSPlotProbaProfiles
Plot distribution of changepoints of each profile
EBSPostK
Posterior probabilities of the number of segments
EBSPrior
Matrix of prior values for each interval
EBSPriorProfiles
Matrix of prior values for each interval
EBSProfiles
Exact Bayesian Segmentation for multiple profiles
EBSProfiles-class
Class "EBSProfiles"
EBSStatistic
Statistic for Profile Comparison
getCol
Generic function
getCol-methods
~~ Methods for Function 'getCol' ~~
GetCondition
Segmentation information for one profile out of the set
getData
Generic function
getData-methods
~~ Methods for Function 'getData' ~~
getHyperParameters
Generic function
getHyperParameters-methods
~~ Methods for Function 'getHyperParameters' ~~
getKmax
Generic function
getKmax-methods
~~ Methods for Function 'getKmax' ~~
getLength
Generic function
getLength-methods
~~ Methods for Function 'getLength' ~~
getLi
Generic function
getLi-methods
~~ Methods for Function 'getLi' ~~
getModel
Generic function
getModel-methods
~~ Methods for Function 'getModel' ~~
getOverdispersion
Generic function
getOverdispersion-methods
~~ Methods for Function 'getOverdispersion' ~~
getP
Generic function
getP-methods
~~ Methods for Function 'getP' ~~
getPriorm
Generic function
getPriorm-methods
~~ Methods for Function 'getPriorm' ~~
getVariance
Generic function
getVariance-methods
~~ Methods for Function 'getVariance' ~~
HyperParameters
Generic function
HyperParameters-methods
~~ Methods for Function 'HyperParameters' ~~
Kmax
Generic function
Kmax-methods
~~ Methods for Function 'Kmax' ~~
Length
Generic function
Length-methods
~~ Methods for Function 'Length' ~~
Li
Generic function
Li-methods
~~ Methods for Function 'Li' ~~
matProba
Generic function
matProba-methods
~~ Methods for Function 'matProba' ~~
Model
Generic function
Model-methods
~~ Methods for Function 'Model' ~~
NbConditions
Generic function
NbConditions-methods
~~ Methods for Function 'NbConditions' in Package 'EBS' ~~
Overdispersion
Generic function
Overdispersion-methods
~~ Methods for Function 'Overdispersion' ~~
PriorDistrib
Prior distribution of change-point when uniform prior on...
Priorm
Generic function
Priorm-methods
~~ Methods for Function 'Priorm' ~~
show-methods
~~ Methods for Function 'show' in Package 'methods' ~~
TruncPois
Truncated Poisson distribution
Variance
Generic function
Variance-methods
~~ Methods for Function 'Variance' ~~

Files in this package

EBS/DESCRIPTION
EBS/NAMESPACE
EBS/R
EBS/R/Classes.R
EBS/R/EBS.R
EBS/R/Profiles.R
EBS/R/zzz.r
EBS/man
EBS/man/CardE0.Rd
EBS/man/CardMK.Rd
EBS/man/Col-methods.Rd
EBS/man/Col.Rd
EBS/man/CompCredibility.Rd
EBS/man/Data-methods.Rd
EBS/man/Data.Rd
EBS/man/EBS-class.Rd
EBS/man/EBS-package.Rd
EBS/man/EBSBIC.Rd
EBS/man/EBSDistrib.Rd
EBS/man/EBSICL.Rd
EBS/man/EBSICLProfiles.Rd
EBS/man/EBSPlotProba.Rd
EBS/man/EBSPlotProbaProfiles.Rd
EBS/man/EBSPostK.Rd
EBS/man/EBSPrior.Rd
EBS/man/EBSPriorProfiles.Rd
EBS/man/EBSProfiles-class.Rd
EBS/man/EBSProfiles.Rd
EBS/man/EBSStatistic.Rd
EBS/man/EBSegmentation.Rd
EBS/man/GetCondition.Rd
EBS/man/HyperParameters-methods.Rd
EBS/man/HyperParameters.Rd
EBS/man/Kmax-methods.Rd
EBS/man/Kmax.Rd
EBS/man/Length-methods.Rd
EBS/man/Length.Rd
EBS/man/Li-methods.Rd
EBS/man/Li.Rd
EBS/man/Model-methods.Rd
EBS/man/Model.Rd
EBS/man/NbConditions-methods.Rd
EBS/man/NbConditions.Rd
EBS/man/Overdispersion-methods.Rd
EBS/man/Overdispersion.Rd
EBS/man/PriorDistrib.Rd
EBS/man/Priorm-methods.Rd
EBS/man/Priorm.Rd
EBS/man/TruncPois.Rd
EBS/man/Variance-methods.Rd
EBS/man/Variance.Rd
EBS/man/getCol-methods.Rd
EBS/man/getCol.Rd
EBS/man/getData-methods.Rd
EBS/man/getData.Rd
EBS/man/getHyperParameters-methods.Rd
EBS/man/getHyperParameters.Rd
EBS/man/getKmax-methods.Rd
EBS/man/getKmax.Rd
EBS/man/getLength-methods.Rd
EBS/man/getLength.Rd
EBS/man/getLi-methods.Rd
EBS/man/getLi.Rd
EBS/man/getModel-methods.Rd
EBS/man/getModel.Rd
EBS/man/getOverdispersion-methods.Rd
EBS/man/getOverdispersion.Rd
EBS/man/getP-methods.Rd
EBS/man/getP.Rd
EBS/man/getPriorm-methods.Rd
EBS/man/getPriorm.Rd
EBS/man/getVariance-methods.Rd
EBS/man/getVariance.Rd
EBS/man/matProba-methods.Rd
EBS/man/matProba.Rd
EBS/man/show-methods.Rd
EBS/src
EBS/src/CallEBS.cpp
EBS/src/CallEBS.h
EBS/src/Constants.h
EBS/src/Distributions.cpp
EBS/src/Distributions.h
EBS/src/EBS.cc
EBS/src/Function.cpp
EBS/src/Function.h
EBS/src/GeneralFunctions.cpp
EBS/src/GeneralFunctions.h
EBS/src/LogBinNeg.cpp
EBS/src/LogBinNeg.h
EBS/src/LogGaussienne.cpp
EBS/src/LogGaussienne.h
EBS/src/LogGaussienneHomo.cpp
EBS/src/LogGaussienneHomo.h
EBS/src/LogMatrix.cpp
EBS/src/LogMatrix.h
EBS/src/LogPoisson.cpp
EBS/src/LogPoisson.h
EBS/src/LogVector.cpp
EBS/src/LogVector.h
EBS/src/MyVector.cpp
EBS/src/MyVector.h
EBS/src/Observations.cpp
EBS/src/Observations.h
EBS/src/PriorSize.cpp
EBS/src/PriorSize.h
EBS/src/PriorUnif.cpp
EBS/src/PriorUnif.h