API for Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale

Global functions
AM Man page Source code
Eagle Man page
Eagle-package Man page
GenomicRel Source code
OpenGUI Man page Source code
ReadMap Man page Source code
ReadMarker Man page Source code
ReadPheno Man page Source code
ReshapeM Source code
ReshapeM_rcpp Source code
SummaryAM Man page Source code
build_design_matrix Source code
calcMMt Source code
calcVC Source code
calc_extBIC Source code
calculateH Source code
calculateMMt Source code
calculateMMt_rcpp Source code
calculateMMt_sqrt_and_sqrtinv Source code
calculateP Source code
calculate_a_and_vara Source code
calculate_a_and_vara_rcpp Source code
calculate_reduced_a Source code
calculate_reduced_a_rcpp Source code
calculate_reduced_vara Source code
check.for.NA.in.trait Source code
check.inputs Source code
check.inputs.mlam Source code
constructX Source code
create.ascii Source code
createM_ASCII_rcpp Source code
createMt_ASCII_rcpp Source code
doquiet Source code
emma.MLE Source code
emma.REMLE Source code
emma.delta.ML.LL.w.Z Source code Source code
emma.delta.ML.LL.wo.Z Source code
emma.delta.ML.dLL.w.Z Source code
emma.delta.ML.dLL.wo.Z Source code
emma.delta.REML.LL.w.Z Source code
emma.delta.REML.LL.wo.Z Source code
emma.delta.REML.dLL.w.Z Source code
emma.delta.REML.dLL.wo.Z Source code
emma.eigen.L.w.Z Source code
emma.eigen.L.wo.Z Source code
emma.eigen.R.w.Z Source code
emma.eigen.R.wo.Z Source code
extract_geno Source code
extract_geno_rcpp Source code
find_qtl Source code
form_results Source code
fullpath Source code
getRowColumn Source code
onAttach Source code
print_final Source code
print_header Source code
print_results Source code
print_title Source code
Eagle documentation built on Nov. 17, 2017, 2:20 p.m.